PXD013990

PXD013990 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Geobacter sulfurreducens and Pseudomonas aeruginosa adapted cocultures SWATH-MS
Description	In this study we further investigate the previously observed syntrophic interaction between Geobacter sulfurreducens and Pseudomonas aeruginosa. In early coculture establishment, two genetic variants of G. sulfurreducens emerged that were strongly selected for throughout coculture evolution. Single nucleotide polymorphism (SNP) variants occurred in fabI and tetR genes of G. sulfurreducens. The tetR variants displayed upregulation of adenylate cyclase transporter, CyaE and of RND efflux pump proteins as determined through SWATH-MS proteomics.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:02:18.989.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Lucie Semenec
SpeciesList	scientific name: Bacteria; NCBI TaxID: NCBITaxon:2; scientific name: Geobacter sulfurreducens PCA; NCBI TaxID: 243231;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-05-23 07:27:52	ID requested
1	2020-04-19 23:51:54	announced
⏵ 2	2024-10-22 05:02:19	announced	2024-10-22: Updated project metadata.

Publication List

Semenec L, Vergara IA, Laloo AE, Petrovski S, Bond PL, Franks AE, Adaptive Evolution of Geobacter sulfurreducens in Coculture with Pseudomonas aeruginosa. mBio, 11(2):(2020) [pubmed]
10.1128/mBio.02875-19;

Semenec L, Vergara IA, Laloo AE, Petrovski S, Bond PL, Franks AE, Adaptive Evolution of Geobacter sulfurreducens in Coculture with Pseudomonas aeruginosa. mBio, 11(2):(2020) [pubmed]

10.1128/mBio.02875-19;

Keyword List

submitter keyword: Pseudomonas,Geobacter, SWATH-MS, coculture evolution

submitter keyword: Pseudomonas,Geobacter, SWATH-MS, coculture evolution

Contact List

Ashley E Franks
contact affiliation	Physiology, Anatomy and Microbiology - La Trobe University
contact email	a.franks@latrobe.edu.au
lab head
Lucie Semenec
contact affiliation	La Trobe University
contact email	l.semenec@latrobe.edu.au
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/04/PXD013990
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/04/PXD013990

PRIDE project URI

Repository Record List

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