PXD013953

PXD013953 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparative integrated omics analysis of the Hfq regulon in Bordetella pertussis
Description	This study represents the first attempt to characterize the RNA chaperone Hfq regulon in bacterial pathogen using an integrative omics approach. Gene expression profiles were analyzed by RNA-seq and protein amounts in cell-associated and cell-free fractions were determined by LC-MS/MS technique. Comparative analysis of transcriptomic and proteomic data revealed solid correlation considering the role of Hfq in post-transcriptional control of gene expression. Importantly, our study confirms and further enlightens the role of Hfq in pathogenicity of B. pertussis.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:55:18.624.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Denisa Petrackova
SpeciesList	scientific name: Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251); NCBI TaxID: 257313;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-05-21 05:24:47	ID requested
1	2019-07-02 05:57:35	announced
⏵ 2	2024-10-22 04:55:20	announced	2024-10-22: Updated project metadata.

Publication List

Dienstbier A, Amman F, Š, tipl D, Petr, á, č, kov, á D, Ve, č, erek B, . Int J Mol Sci, 20(12):(2019) [pubmed]
10.3390/ijms20123073;

Dienstbier A, Amman F, Š, tipl D, Petr, á, č, kov, á D, Ve, č, erek B, . Int J Mol Sci, 20(12):(2019) [pubmed]

10.3390/ijms20123073;

Keyword List

submitter keyword: hfq regulon, LFQ MS,Bordetella pertussis

submitter keyword: hfq regulon, LFQ MS,Bordetella pertussis

Contact List

Branislav Vecerek
contact affiliation	Laboratory of Post-Transcriptional Control of Gene Expression Institute of Microbiology, v.v.i. Academy of Sciences of the Czech Republic Videnska 1083; Prague; Czech Republic Tel: +420 296 442 507
contact email	vecerek@biomed.cas.cz
lab head
Denisa Petrackova
contact affiliation	Institute of Microbiology of the CAS, v. v. i.
contact email	petrack@biomed.cas.cz
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD013953
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD013953

PRIDE project URI

Repository Record List

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