PXD013797

PXD013797 is an original dataset announced via ProteomeXchange.

Title	Label-free quantitative proteomics of enriched nuclei from sugarcane (Saccharum ssp) stems in response to drought stress
Description	Drought is considered the major abiotic stress limiting crop productivity. This study sought to identify proteins involved in the drought response in sugarcane stems submitted to drought stress. The integration of nuclei enrichment sample preparation with the shotgun proteomic approach (nLC-MS/MS) resulted in great coverage of the sugarcane stem proteome with 5,381 protein groups identified (1% FDR). A total of 1,204 differentially accumulated proteins (DAPs) were detected in response to drought, among which 586 showed increased abundance and 618 decreased abundance.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:15:00.254.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Fernanda Salvato
SpeciesList	scientific name: Saccharum sp.; NCBI TaxID: 15819;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-05-10 06:22:13	ID requested
1	2019-06-10 09:04:57	announced
2	2019-06-14 00:28:22	announced	Updated publication reference for PubMed record(s): 31172662.
⏵ 3	2024-10-22 04:15:01	announced	2024-10-22: Updated project metadata.

10.1002/pmic.201900004;

Salvato F, Loziuk P, Kiyota E, Daneluzzi GS, Ara, ú, jo P, Muddiman DC, Mazzafera P, Label-Free Quantitative Proteomics of Enriched Nuclei from Sugarcane (Saccharum ssp) Stems in Response to Drought Stress. Proteomics, 19(14):e1900004(2019) [pubmed]

submitter keyword: RNA regulation, shotgun proteomics,drought, transcription factor., Saccharum spp

Fernanda Salvato
contact affiliation	North Carolina State University
contact email	fersalvato@gmail.com
lab head
Fernanda Salvato
contact affiliation	North Carolina State University
contact email	fersalvato@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/06/PXD013797

PRIDE project URI

• PRIDE
  1. PXD013797
     1. Label: PRIDE project
     2. Name: Label-free quantitative proteomics of enriched nuclei from sugarcane (Saccharum ssp) stems in response to drought stress