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PXD013655

PXD013655 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSystems Biology of Lipid Accumulating Organisms
DescriptionCharacterization of microbial communities at the genomic, transcriptomic, proteomic and metabolomic levels, with a special interest on lipid accumulating bacterial populations, which are naturally enriched in biological wastewater treatment systems and may be harnessed for the conversion of mixed lipid substrates (wastewater) into biodiesel. The project aims to elucidate the genetic blueprints and the functional relevance of specific populations within the community. It focuses on within-population genetic and functional heterogeneity, trying to understand how fine-scale variations contribute to differing lipid accumulating phenotypes. Insights from this project will contribute to the understanding the functioning of microbial ecosystems, and improve optimization and modeling strategies for current and future biological wastewater treatment processes. This project contains datasets derived from the same biological wastewater treatment plant. The data includes metagenomes, metatranscriptomes, metaproteomes and organisms isolated in pure cultures. Characterization of microbial communities at the genomic, transcriptomic, proteomic and metabolomic levels, with a special interest on lipid accumulating bacterial populations, which are naturally enriched in biological wastewater treatment systems and may be harnessed for the conversion of mixed lipid substrates (wastewater) into biodiesel. The project aims to elucidate the genetic blueprints and the functional relevance of specific populations within the community. It focuses on within-population genetic and functional heterogeneity, trying to understand how fine-scale variations contribute to differing lipid accumulating phenotypes. Insights from this project will contribute to the understanding the functioning of microbial ecosystems, and improve optimization and modeling strategies for current and future biological wastewater treatment processes. This project contains datasets derived from the same biological wastewater treatment plant. The data includes metagenomes, metatranscriptomes, metaproteomes and organisms isolated in pure cultures.
HostingRepositoryPRIDE
AnnounceDate2020-08-19
AnnouncementXMLSubmission_2020-08-18_23:03:59.xml
DigitalObjectIdentifierhttp://dx.doi.org/10.6019/PXD013655
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterBenoit Kunath
SpeciesList scientific name: wastewater metagenome; NCBI TaxID: 527639;
ModificationListOxidation; Carbamidomethyl
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-04-29 01:04:46ID requested
12020-08-18 23:03:59announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: metaproteomics
Activated sludge
Time Series
Lipid Accumulation
CRISPR
Metagenomics
Phages
Plamids
Contact List
Paul Wilmes
contact affiliationEco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg
contact emailpaul.wilmes@uni.lu
lab head
Benoit Kunath
contact affiliationLCSB
contact emailbenoit.kunath@uni.lu
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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