PXD013628

PXD013628 is an original dataset announced via ProteomeXchange.

Title	Identification of proteins synthesized from long-lived mRNAs during seed germination in rice
Description	To identify the proteins synthesized from long-lived mRNAs at early phase of germination, proteome of embryos at 0 DAI (dry embryos), 1 DAI with α-amanitin and 1 DAI without α-amanitin were analyzed by using LC-MS/MS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:54:28.798.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Hirofumi Nakagami
SpeciesList	scientific name: Oryza sativa (Rice); NCBI TaxID: 4530;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-04-24 23:53:30	ID requested
1	2019-08-13 04:18:28	announced
2	2019-08-13 04:39:06	announced	Updated publication reference for PubMed record(s): 31373371.
⏵ 3	2024-10-22 04:54:29	announced	2024-10-22: Updated project metadata.

10.1093/pcp/pcz152;

Sano N, Takebayashi Y, To A, Mhiri C, Rajjou LC, Nakagami H, Kanekatsu M, Shotgun Proteomic Analysis Highlights the Roles of Long-Lived mRNAs and De Novo Transcribed mRNAs in Rice Seeds upon Imbibition. Plant Cell Physiol, 60(11):2584-2596(2019) [pubmed]

curator keyword: Biological

submitter keyword: α-amanitin, Imbibition, Embryo,Rice

Hirofumi Nakagami
contact affiliation	Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research
contact email	nakagami@mpipz.mpg.de
lab head
Hirofumi Nakagami
contact affiliation	Max Planck Institute for Plant Breeding Research
contact email	nakagami@mpipz.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD013628

PRIDE project URI

• PRIDE
  1. PXD013628
     1. Label: PRIDE project
     2. Name: Identification of proteins synthesized from long-lived mRNAs during seed germination in rice