PXD013608
PXD013608 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | NIST Candidate RM 8461 Human Liver for Proteomics |
Description | Advances in mass spectrometry (MS) instrumentation resulting in higher mass resolution and higher duty cycles have allowed deeper coverages of proteomes. The development of candidate RM 8461 Human Liver for Proteomics was undertaken to provide the community with a sample with suitable complexity for method development and validation, instrument and data validation, and determining identification QC thresholds. Herein we describe a comparison of methods and homogeneity assessment in which candidate RM 8461 Human Liver for Proteomics is solubilized, the proteins reduced, alkylated, digested and the tryptic peptides and their modifications are identified by bottom up LC/MS/MS to assess deep (e.g. thousands of identifications) protein coverage. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-07 |
AnnouncementXML | Submission_2024-10-07_10:26:30.764.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD013608 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | W. Clay Davis |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | Oxidation |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2019-04-23 06:44:45 | ID requested | |
⏵ 1 | 2024-10-07 10:26:31 | announced |
Publication List
10.1038/s41597-019-0336-7; |
10.6019/PXD013608; |
Davis WC, Kilpatrick LE, Ellisor DL, Neely BA, Characterization of a human liver reference material fit for proteomics applications. Sci Data, 6(1):324(2019) [pubmed] |
Keyword List
submitter keyword: Human, QC Material, LC-MSMS, Reference Material, NIST, Liver, Orbitrap |
Contact List
Clay Davis | |
---|---|
contact affiliation | National Institute of Standards and Technology Chemical Sciences Division Charleston, SC, USA |
contact email | clay.davis@nist.gov |
lab head | |
W. Clay Davis | |
contact affiliation | National Institute of Standards and Technology |
contact email | clay.davis@nist.gov |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD013608 |
PRIDE project URI |
Repository Record List
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