PXD013528
PXD013528 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | FFPE proteomes for Group 3 and Group 4 subtypes of paediatric medulloblastoma |
| Description | These data were generated in May of 2016 on a Thermo Q-Exactive at the University of Cape Town in South Africa. Samples were drawn from 48 cases of malignant medulloblastoma that were added to the FFPE archive between 1988 and 2014 under approval from the University of Cape Town Faculty of Health Sciences Human Research Ethics Committee (HREC 149/2014). Assignment to Group 3 or Group 4 categories was performed via Nanostring analysis and IHC (other subtypes were also analyzed in the larger study). Five distinct samples from each of the two Groups were subjected to LC-MS/MS. After conversion to mzML, a total of 245,589 tandem mass spectra were available, of which 36% corresponded to doubly-charged precursor ions. Over all ten experiments, tandem mass spectra were acquired at a rate of 4.55 Hz. MS/MS scans averaged a peak density average of 148 peaks per spectrum. More complete information is available in Omesan Nair's Ph.D. Dissertation: http://hdl.handle.net/11427/26896. |
| HostingRepository | MassIVE |
| AnnounceDate | 2019-04-16 |
| AnnouncementXML | Submission_2019-04-16_08:02:33.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | David L. Tabb |
| SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
| ModificationList | Carbamidomethyl; Methyl; Dimethyl; Oxidation; Dioxidation |
| Instrument | Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2019-04-16 07:43:28 | ID requested | |
| ⏵ 1 | 2019-04-16 08:02:34 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: FFPE, medulloblastoma, brain |
Contact List
| Jonathan M Blackburn | |
|---|---|
| contact affiliation | Division of Computational and Systems Biology, Department of Integrative Biomedical Science, Faculty of Health Science, University of Cape Town, South Africa. |
| contact email | jonathan.blackburn@uct.ac.za |
| lab head | |
| David L. Tabb | |
| contact affiliation | Stellenbosch University |
| contact email | dtabb@sun.ac.za |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000083696 |
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