PXD013421 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Combinatorial peptide library based on oncogenic KRAS peptide (400 peptides) |
Description | The KRAS peptide library is a part of our larger effort to understand peptide variants in shotgun proteomics. Herein, the interest is in discrimination of homologous peptides---a problem related to detection of peptide variants. The dataset contains MS/MS spectra of 400 synthetic peptides of form LVVVGA-XX-VGK. Each peptide is measured in separate LC-MS/MS run, thus the actual peptide for each dataset is known. In summary, the dataset contains annotated spectra of homologous peptides and can be used for development and optimization of peptide detection methods. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-08 |
AnnouncementXML | Submission_2024-10-08_11:37:05.067.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Miroslav Hruska |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-04-09 04:08:31 | ID requested | |
⏵ 1 | 2024-10-08 11:37:05 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: LC-MS, optimization, peptide library, KRAS |
Contact List
Dzubak Petr |
contact affiliation | Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacky University, Olomouc |
contact email | petr.dzubak@upol.cz |
lab head | |
Miroslav Hruska |
contact affiliation | Institute of Molecular and Translational Medicine |
contact email | hruska.miro@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD013421 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD013421
- Label: PRIDE project
- Name: Combinatorial peptide library based on oncogenic KRAS peptide (400 peptides)