PXD013421

PXD013421 is an original dataset announced via ProteomeXchange.

Title	Combinatorial peptide library based on oncogenic KRAS peptide (400 peptides)
Description	The KRAS peptide library is a part of our larger effort to understand peptide variants in shotgun proteomics. Herein, the interest is in discrimination of homologous peptides---a problem related to detection of peptide variants. The dataset contains MS/MS spectra of 400 synthetic peptides of form LVVVGA-XX-VGK. Each peptide is measured in separate LC-MS/MS run, thus the actual peptide for each dataset is known. In summary, the dataset contains annotated spectra of homologous peptides and can be used for development and optimization of peptide detection methods.
HostingRepository	PRIDE
AnnounceDate	2024-10-08
AnnouncementXML	Submission_2024-10-08_11:37:05.067.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Miroslav Hruska
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2019-04-09 04:08:31	ID requested
⏵ 1	2024-10-08 11:37:05	announced

Dataset with its publication pending

submitter keyword: LC-MS, optimization, peptide library, KRAS

Dzubak Petr
contact affiliation	Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry, Palacky University, Olomouc
contact email	petr.dzubak@upol.cz
lab head
Miroslav Hruska
contact affiliation	Institute of Molecular and Translational Medicine
contact email	hruska.miro@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD013421

PRIDE project URI

• PRIDE
  1. PXD013421
     1. Label: PRIDE project
     2. Name: Combinatorial peptide library based on oncogenic KRAS peptide (400 peptides)