PXD013323

PXD013323 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	iTRAQ of Wucai (Brassica campestris L.)leaf color
Description	Chlorophyll plays critical roles in photosynthetic light harvesting, energy transduction and plant development. In this study, a novel wucai (Brassica campestris L.) germplasm with green outer leaves and yellow inner leaves at the adult stage (W7-2) was used to examine chlorophyll metabolism response to cold acclimation. A green leaf wucai genotype without leaf color changes named W7-1 was selected as the control to evaluate the chlorophyll metabolism changes of W7-2. Compared to W7-1, the contents of chlorophyll a (Chl a) and chlorophyll b (Chl b) in W7-2 were significantly reduced at five developmental stages (13, 21, 29, 37 and 45 days after planting (DAP). An iTRAQ-based quantitative proteomic analysis was carried out at 21 and 29 DAP according to the leaf color changes in both of genotypes. A total of 1409 proteins were identified, of which 218 showed differential accumulations between W7-2 and W7-1 during the two developmental stages.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_03:59:15.294.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Lingyun Yuan
SpeciesList	scientific name: Brassica napus (Rape); NCBI TaxID: 3708;
ModificationList	iTRAQ8plex-116 reporter+balance reagent acylated residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-04-01 03:47:56	ID requested
1	2019-05-03 14:08:24	announced
⏵ 2	2024-10-22 03:59:23	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.jproteome.9b00016;
Xie S, Nie L, Zheng Y, Wang J, Zhao M, Zhu S, Hou J, Chen G, Wang C, Yuan L, Comparative Proteomic Analysis Reveals That Chlorophyll Metabolism Contributes to Leaf Color Changes in Wucai ( Brassica campestris L.) Responding to Cold Acclimation. J Proteome Res, 18(6):2478-2492(2019) [pubmed]

10.1021/acs.jproteome.9b00016;

Xie S, Nie L, Zheng Y, Wang J, Zhao M, Zhu S, Hou J, Chen G, Wang C, Yuan L, Comparative Proteomic Analysis Reveals That Chlorophyll Metabolism Contributes to Leaf Color Changes in Wucai ( Brassica campestris L.) Responding to Cold Acclimation. J Proteome Res, 18(6):2478-2492(2019) [pubmed]

Keyword List

submitter keyword: Wucai
Leaf color
iTRAQ-based quantitative proteomics
Chlorophyll biosynthesis

submitter keyword: Wucai

Leaf color

iTRAQ-based quantitative proteomics

Chlorophyll biosynthesis

Contact List

Lingyun Yuan
contact affiliation	College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, 230036 Hefei, Anhui, China;
contact email	ylyun99@163.com
lab head
Lingyun Yuan
contact affiliation	Anhui Agricultural University
contact email	ylyun99@163.com
dataset submitter

Full Dataset Link List

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PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD013323

PRIDE project URI

Repository Record List

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