PXD013253

PXD013253 is an original dataset announced via ProteomeXchange.

Title	Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation
Description	Efficient biotechnological conversion of lignocellulosic biomass to valuable products, such as transportation biofuels, is ecologically attractive, yet requires substantially improved mechanistic understanding and optimization to become economically feasible. Cellulolytic clostridia, such as Ruminiclostridium papyrosolvens (previously Clostridium papyrosolvens), produce a wide variety of CAZymes including extracellular multi-enzyme complexes-cellulosomes with different specificities for enhanced cellulosic biomass degradation. Identification of the secretory components, especially CAZymes, during bacterial growth on lignocellulose and their influence on its catalytic capabilities provide insight into construction of potent cellulase systems of cell factories tuned or optimized for the targeted substrate by matching the type and abundance of enzymes and corresponding transporters.
HostingRepository	PRIDE
AnnounceDate	2019-11-11
AnnouncementXML	Submission_2019-11-11_15:09:58.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Mohamed El Hajjami
SpeciesList	scientific name: [Clostridium] papyrosolvens DSM 2782; NCBI TaxID: 588581;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2019-03-26 08:50:48	ID requested
⏵ 1	2019-11-11 15:09:59	announced

Ren Z, You W, Wu S, Poetsch A, Xu C, reveal its enzymatic basis for lignocellulose degradation. Biotechnol Biofuels, 12():183(2019) [pubmed]

curator keyword: Biological

submitter keyword: Proteomics, Bacterial genetics, physiology and metabolic engineering, MS2

You Wuxin
contact affiliation	Ruhr-Universität Bochum LS Biochemie der Pflanzen Universitätsstraße 150 44780 Bochum
contact email	wu.you@rub.de
lab head
Mohamed El Hajjami
contact affiliation	Ruhr-University Bochum
contact email	bcwuppertal@web.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD013253

PRIDE project URI

• PRIDE
  1. PXD013253
     1. Label: PRIDE project
     2. Name: Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation