PXD013237

PXD013237 is an original dataset announced via ProteomeXchange.

Title	Proteomic response to heat shock in males and females of a Baikal endemic amphipod Eulimnogammarus cyaneus (Dyb. 1874) (Crustacea: Amphipoda)
Description	In this project we aimed to establish a proteome-based pipeline for a non-model Baikal endemic amphipod species Eulimnogammarus cyaneus (Dybowsky, 1874). We used next-generation transcriptome sequencing to create a database for protein identification and investigated the proteome of E. cyaneus with LC-MS with particular emphasis on sexual dimorphism and response to acute thermal stress. We were able to characterize ca. 1000 protein groups and found male- and female-specific proteins, as well as proteins specific for thermal stress conditions.
HostingRepository	PRIDE
AnnounceDate	2020-11-19
AnnouncementXML	Submission_2020-11-19_06:52:59.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Polina Drozdova
SpeciesList	scientific name: Eulimnogammarus cyaneus; NCBI TaxID: 52945;
ModificationList	monohydroxylated residue; acetylated residue
Instrument	LTQ Orbitrap XL ETD

Revision	Datetime	Status	ChangeLog Entry
0	2019-03-26 06:49:25	ID requested
⏵ 1	2020-11-19 06:53:00	announced

Bedulina D, Drozdova P, Gurkov A, von Bergen M, Stadler PF, Luckenbach T, Timofeyev M, Kalkhof S, Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus. Sci Total Environ, 763():143008(2021) [pubmed]

curator keyword: Biological

submitter keyword: Eulimnogammarus cyaneus, heat shock, Amphipoda, Baikal, intersexual difference

Stefan Kalkhof
contact affiliation	Institute of Bioanalysis, University of Applied Sciences and Arts of Coburg, Friedrich-Streib-Str. 2, 96450 Coburg, Germany
contact email	Stefan.kalkhof@hs-coburg.de
lab head
Polina Drozdova
contact affiliation	Irkutsk State University
contact email	drozdovapb@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/11/PXD013237

PRIDE project URI

• PRIDE
  1. PXD013237
     1. Label: PRIDE project
     2. Name: Proteomic response to heat shock in males and females of a Baikal endemic amphipod Eulimnogammarus cyaneus (Dyb. 1874) (Crustacea: Amphipoda)