PXD013210

PXD013210 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline
Description	Analysis of synthetic peptide reference datasets to demonstrate the performance of PTMProphet, a free and open-source software tool integrated into the Trans-Proteomic Pipeline, which reanalyzes identified spectra from any search engine for which pepXML output is available to provide localization confidence to enable appropriate further characterization of biologic events.
HostingRepository	PRIDE
AnnounceDate	2019-07-18
AnnouncementXML	Submission_2019-07-18_01:22:03.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD013210
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Zhi Sun
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Phospho; Carbamidomethylation; Oxidation
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-03-25 02:33:31	ID requested
⏵ 1	2019-07-18 01:38:40	announced

Publication List

Shteynberg DD, Deutsch EW, Campbell DS, Hoopmann MR, Kusebauch U, Lee D, Mendoza L, Midha MK, Sun Z, Whetton AD, Moritz RL, PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. J Proteome Res, 18(12):4262-4272(2019) [pubmed]

Shteynberg DD, Deutsch EW, Campbell DS, Hoopmann MR, Kusebauch U, Lee D, Mendoza L, Midha MK, Sun Z, Whetton AD, Moritz RL, PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. J Proteome Res, 18(12):4262-4272(2019) [pubmed]

Keyword List

submitter keyword: synthetic phospho-peptides, human, LC-MS/MS, site localization

submitter keyword: synthetic phospho-peptides, human, LC-MS/MS, site localization

Contact List

Robert Moritz
contact affiliation	Institute for Systems Biology
contact email	rmoritz@systemsbiology.org
lab head
Zhi Sun
contact affiliation	Robert Moritz's Lab
contact email	zsun@systemsbiology.org
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD013210
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD013210

PRIDE project URI

Repository Record List

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