PXD013107

PXD013107 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	20180725 Buthelezi TripleTOF FFPE of human breast tissue
Description	Sindisiwe Buthelezi generated these "shotgun" data in July of 2018 on a SCIEX TripleTOF 6600 at the Council for Scientific and Industrial Research in Pretoria, South Africa. The twelve Information-Dependent Acquisition experiments compared one-slide-at-a-time pressure-based paraffin removal (A1-4) with all-at-once paraffin removal (A5-8) with freshly frozen samples (A9-12) using human breast tissue under CSIR Research Ethics Committee reference 213/2017. After conversion to mzML, a total of 474,722 tandem mass spectra were available, of which 39% resulted from doubly-charged precursor ions. Over all twelve experiments, tandem mass spectra were acquired at a rate of 8.40 Hz. MS/MS scans averaged a peak density average of 54 peaks per spectrum.
HostingRepository	MassIVE
AnnounceDate	2019-03-28
AnnouncementXML	Submission_2019-03-28_07:39:49.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	David L. Tabb
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	Carbamidomethyl; Oxidation; Dimethyl; Methyl
Instrument	TripleTOF 6600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-03-15 10:03:33	ID requested
⏵ 1	2019-03-28 07:39:50	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: FFPE, Formalin-fixed paraffin embedded

submitter keyword: FFPE, Formalin-fixed paraffin embedded

Contact List

Stoyan Stoychev
contact affiliation	Council for Scientific and Industrial Research
contact email	SStoychev@csir.co.za
lab head
David L. Tabb
contact affiliation	Stellenbosch University
contact email	dtabb@sun.ac.za
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000083581