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PXD012859

PXD012859 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSloth collagen phylogenetics - The living tree sloths Choloepus and Bradypus are the only remaining members of Folivora, a major xenarthran radiation that occupied a wide range of habitats in many parts of the western hemisphere during the Cenozoic, including both continents and the West Indies (Antilles)
DescriptionThe living tree sloths Choloepus and Bradypus are the only remaining members of Folivora, a major xenarthran radiation that occupied a wide range of habitats in many parts of the western hemisphere during the Cenozoic, including both continents and the West Indies (Antilles). To date, molecular evidence has played only a minor role in folivoran systematics, as most recently-extinct species lived in places not conducive to DNA preservation. Here we utilize collagen sequence information to assess the relationships of tree sloths to a large sample (13 species) of extinct Quaternary folivorans.
HostingRepositoryPRIDE
AnnounceDate2020-03-12
AnnouncementXMLSubmission_2020-03-12_03:47:05.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSamantha Presslee
SpeciesList scientific name: Mylodontidae; NCBI TaxID: 48781; scientific name: Megalonychidae; NCBI TaxID: 227508; scientific name: Mylodon darwinii (Giant ground sloth); NCBI TaxID: 48784; scientific name: Cingulata; NCBI TaxID: 948951; scientific name: Bradypus variegatus; NCBI TaxID: 9355; scientific name: Choloepus hoffmanni; NCBI TaxID: 9358; scientific name: Nothrotheriops shastensis; NCBI TaxID: 136416; scientific name: Megatheriidae; NCBI TaxID: 136417;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
InstrumentOrbitrap Fusion Lumos; Q Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-02-25 01:56:44ID requested
12019-06-07 01:10:35announced
22020-03-12 03:47:07announced2020-03-12: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
curator keyword: Biological
submitter keyword: Sloth, Collagen, Proteomics, Phylogenetics
Contact List
Matthew Collins
contact affiliationBioArCh, Department of Archaeology, University of York (Until 2018)
contact emailmatthew@palaeome.org
lab head
Samantha Presslee
contact affiliationUniversity of York
contact emailslp534@york.ac.uk
dataset submitter
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Dataset FTP location
PRIDE project URI
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