PXD012803

PXD012803 is an original dataset announced via ProteomeXchange.

Title	Label-Free Quantification of Yeast Cellular Proteome
Description	Precursor ion intensity quantification and intensity-based absolute quantity estimation (IBAQ) was used to on the mixture of yeast cell lysates in order to estimate the absolute concentrations of the proteins.
HostingRepository	PRIDE
AnnounceDate	2020-03-06
AnnouncementXML	Submission_2020-08-22_16:46:50.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Egor Vorontsov
SpeciesList	scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2019-02-20 06:48:36	ID requested
1	2020-03-06 00:23:01	announced
2	2020-03-24 04:41:47	announced	2020-03-24: Updated publication reference for PubMed record(s): 32184324.
3	2020-04-27 22:14:04	announced	2020-03-24: Updated publication reference for PubMed record(s): 32184324. 2020-04-28: Updated publication reference for PubMed record(s): 32312967, 32184324.
⏵ 4	2020-08-22 16:46:53	announced	2020-03-24: Updated publication reference for PubMed record(s): 32184324. 2020-04-28: Updated publication reference for PubMed record(s): 32312967, 32184324. 2020-08-23: Updated publication reference for PubMed record(s): 32312967, 32817546, 32184324.

Bj, ö, rkeroth J, Campbell K, Malina C, Yu R, Di Bartolomeo F, Nielsen J, Proteome reallocation from amino acid biosynthesis to ribosomes enables yeast to grow faster in rich media. Proc Natl Acad Sci U S A, 117(35):21804-21812(2020) [pubmed]

Di Bartolomeo F, Malina C, Campbell K, Mormino M, Fuchs J, Vorontsov E, Gustafsson CM, Nielsen J, Absolute yeast mitochondrial proteome quantification reveals trade-off between biosynthesis and energy generation during diauxic shift. Proc Natl Acad Sci U S A, 117(13):7524-7535(2020) [pubmed]

Yu R, Campbell K, Pereira R, Bj, ö, rkeroth J, Qi Q, Vorontsov E, Sihlbom C, Nielsen J, Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast. Nat Commun, 11(1):1881(2020) [pubmed]

submitter keyword: LC-MS, label-free quantification, intensity-based absolute quantification, Saccharomyces cerevisiae

Jens Nielsen
contact affiliation	Professor. Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark
contact email	nielsenj@chalmers.se
lab head
Egor Vorontsov
contact affiliation	Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden
contact email	yegor.msu@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD012803

PRIDE project URI

• PRIDE
  1. PXD012803
     1. Label: PRIDE project
     2. Name: Label-Free Quantification of Yeast Cellular Proteome