PXD012763

PXD012763 is an original dataset announced via ProteomeXchange.

Title	Profiling transcriptome and proteome of orange-spotted grouper (Epinephelus coioides) after nervous necrosis virus infection
Description	Grouper is an important commercial maricultural fish, which suffer viral nervous necrosis (VNN) disease at the larval and juvenile stages, but the changes of transcriptomics and proteomics during viral infection remain unknown. In this study, we applied RNA-seq and label-free mass spectrum for the first time to depict the map of transcriptomics and proteomics in non-infected, susceptible-infected and tolerate-infected grouper in larval stage. Further analyses showed that the transcriptome and proteome change dramatically among 3 distinct groups, indicating that different immune response for infected and perststent grouper in larval stage. These valuable transcriptomics and proteomics datasets enable the investigation of molecular mechanism in nervous necrosis (VNN) virus infection, thus helps the further development of molecular breeding and marine fishery
HostingRepository	PRIDE
AnnounceDate	2019-03-21
AnnouncementXML	Submission_2019-03-21_04:52:29.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	hui Ge
SpeciesList	scientific name: Epinephelus coioides; NCBI TaxID: 94232;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2019-02-18 06:07:42	ID requested
⏵ 1	2019-03-21 04:52:30	announced

Dataset with its publication pending

submitter keyword: transcriptome, proteome, nervous necrosis virus infection

Ge Hui
contact affiliation	Fisheries Research Institute of Fujian
contact email	fisheriesLab@163.com
lab head
hui Ge
contact affiliation	Fisheries Research Institute of Fujian
contact email	fisheriesLab@163.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD012763

PRIDE project URI

• PRIDE
  1. PXD012763
     1. Label: PRIDE project
     2. Name: Profiling transcriptome and proteome of orange-spotted grouper (Epinephelus coioides) after nervous necrosis virus infection