PXD012761

PXD012761 is an original dataset announced via ProteomeXchange.

Title	Plant Cell Wall Proteomics: A Focus on Monocot Species, Brachypodium distachyon, Saccharum spp. and Oryza sativa
Description	We performed cell wall proteins (CWPs) extraction and analysis from sugarcane 7-month-old young and mature leaves and basal and apical internodes in order to point the differences regarding the cell wall proteome composition in these specific organs and diverse developmental stages. We used two different extraction methods for leaves CWPs: destructive and non-destructive. For internodes, only the non-destructive technique was used. The collection of CWPs was identified through LC-MS/MS analyses. Altogether, 110 sugarcane CWPs were identified and classified into eight functional categories. Sugarcane has one of the highest coverage of CWPs identified by mass spectrometry, reaching 283.
HostingRepository	PRIDE
AnnounceDate	2019-04-24
AnnouncementXML	Submission_2019-05-14_07:26:27.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Thais Cataldi
SpeciesList	scientific name: Saccharum hybrid cultivar SP80-3280; NCBI TaxID: 193079;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Synapt MS

Revision	Datetime	Status	ChangeLog Entry
0	2019-02-18 06:02:01	ID requested
1	2019-04-24 05:29:25	announced
⏵ 2	2019-05-14 07:26:28	announced	Updated publication reference for PubMed record(s): 31018495.

Calderan-Rodrigues MJ, Guimar, ã, es Fonseca J, de Moraes FE, Vaz Setem L, Carmanhanis Begossi A, Labate CA, . Int J Mol Sci, 20(8):(2019) [pubmed]

submitter keyword: plant cell wall/proteome/monocot/stiff brome/rice/sugarcane

Carlos Alberto Labate, Maria Juliana Calderan-Rodrigues, Thaís Regiani Cataldi
contact affiliation	Department of Genetics, "Luiz de Queiroz" College of Agricculture, University of São Paulo, Piracicaba, Brazil
contact email	calabate@usp.br
lab head
Thais Cataldi
contact affiliation	ESALQ USP
contact email	thais.cataldi@usp.br
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/04/PXD012761

PRIDE project URI

• PRIDE
  1. PXD012761
     1. Label: PRIDE project
     2. Name: Plant Cell Wall Proteomics: A Focus on Monocot Species, Brachypodium distachyon, Saccharum spp. and Oryza sativa