PXD012662

PXD012662 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	RNA degradosome components purified from Mycobacterium tuberculosis
Description	The dataset accompanying a publication describing the RNA degradosome components in Mycobacterium tuberculosis (Mtb). Individual RNA degradosome components from Mtb (PNPase, RNase E, RNase J, RhlE and Enolase) were tagged with eGFP and used as baits to pull-down their interaction partners. The protein-complexes were purified by affinity chromatography, using previously published protocols, and submitted to LC-MS analysis.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:53:25.806.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Przemyslaw Plocinski
SpeciesList	scientific name: Mycobacterium tuberculosis H37Rv; NCBI TaxID: 83332;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-02-11 01:50:29	ID requested
1	2019-04-01 00:41:48	announced
2	2019-04-12 01:40:02	announced	Updated publication reference for PubMed record(s): 30957850.
⏵ 3	2024-10-22 04:53:30	announced	2024-10-22: Updated project metadata.

Publication List

10.1093/nar/gkz251;
P, ł, oci, ń, ski P, Macios M, Houghton J, Niemiec E, P, ł, oci, ń, ska R, Brzostek A, S, ł, omka M, Dziadek J, Young D, Dziembowski A, Proteomic and transcriptomic experiments reveal an essential role of RNA degradosome complexes in shaping the transcriptome of Mycobacterium tuberculosis. Nucleic Acids Res, 47(11):5892-5905(2019) [pubmed]

10.1093/nar/gkz251;

P, ł, oci, ń, ski P, Macios M, Houghton J, Niemiec E, P, ł, oci, ń, ska R, Brzostek A, S, ł, omka M, Dziadek J, Young D, Dziembowski A, Proteomic and transcriptomic experiments reveal an essential role of RNA degradosome complexes in shaping the transcriptome of Mycobacterium tuberculosis. Nucleic Acids Res, 47(11):5892-5905(2019) [pubmed]

Keyword List

submitter keyword: tuberculosis, RNA degradation

submitter keyword: tuberculosis, RNA degradation

Contact List

Andrzej Dziembowski
contact affiliation	Institute of Biochemistry and Biophysics, Polish Academy of Sciences
contact email	andrzej.dziembowski.ibb@gmail.com
lab head
Przemyslaw Plocinski
contact affiliation	Institute of Medical Biology of the Polish Academy of Sciences
contact email	przemyslaw.plocinski@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/04/PXD012662
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/04/PXD012662

PRIDE project URI

Repository Record List

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