PXD012647

PXD012647 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Human lymphoma cell membrane proteomics by Pitchfork strategy
Description	We combined glycopeptide enrichment by SPEG (Tian et al., 2007) with a hydrophobic segment-oriented hpTC method (Vít et al 2016) and a standard “detergent and trypsin” approach into a tree-pronged “Pitchfork” strategy for the analysis of membrane proteome in human lymphoma cells.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:51:06.444.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jiri Petrak
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	homoserine lactone; homoserine; deamidated residue
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-02-08 07:45:54	ID requested
1	2019-03-29 11:38:23	announced
2	2019-07-15 01:03:08	announced	Updated publication reference for PubMed record(s): 31176011.
⏵ 3	2024-10-22 04:51:07	announced	2024-10-22: Updated project metadata.

Publication List

10.1016/j.jprot.2019.103411;
Vit O, Harant K, Klener P, Man P, Petrak J, A three-pronged "Pitchfork" strategy enables an extensive description of the human membrane proteome and the identification of missing proteins. J Proteomics, 204():103411(2019) [pubmed]

10.1016/j.jprot.2019.103411;

Vit O, Harant K, Klener P, Man P, Petrak J, A three-pronged "Pitchfork" strategy enables an extensive description of the human membrane proteome and the identification of missing proteins. J Proteomics, 204():103411(2019) [pubmed]

Keyword List

submitter keyword: lymphoma,membrane proteins, IMP, hPTC, SPEG

submitter keyword: lymphoma,membrane proteins, IMP, hPTC, SPEG

Contact List

Jiri Petrak
contact affiliation	BIOCEV, First Faculty of Medicine, Charles University, Czech Republic
contact email	jpetr@lf1.cuni.cz
lab head
Jiri Petrak
contact affiliation	Charles University
contact email	jpetr@lf1.cuni.cz
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD012647
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD012647

PRIDE project URI

Repository Record List

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