PXD012642

PXD012642 is an original dataset announced via ProteomeXchange.

Title	Proteomic analysis of E. coli K-12 LE392, P. putida KT2440 under exposure of six non-antibiotic pharmaceuticals
Description	The goals of this study are to use SWATH-MS to detect bacterial proteomic profiles of E. coli K-12 LE392 with conjugative RP4 plasmid, P. putida KT2440, and their protein response under the exposure of six kinds of non-antibiotic pharmaceuticals, i.e., ibuprofen (ibu), naproxen (nap), gemfibrozil (gem), iopromide (iop), diclofenac (dic), propanolol (pro). Each treatment condition was conducted in triplicate. By comparing the proteomic profiles of experimental groups and control group, the effects of these non-antibiotic pharmaceuticals on translational levels can be revealed.
HostingRepository	PRIDE
AnnounceDate	2022-02-15
AnnouncementXML	Submission_2022-02-15_08:57:13.696.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jianhua Guo
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2019-02-08 05:27:19	ID requested
⏵ 1	2022-02-15 08:57:14	announced

Wang Y, Lu J, Zhang S, Li J, Mao L, Yuan Z, Bond PL, Guo J, Non-antibiotic pharmaceuticals promote the transmission of multidrug resistance plasmids through intra- and intergenera conjugation. ISME J, 15(9):2493-2508(2021) [pubmed]

curator keyword: Biomedical

submitter keyword: E. coli, P. putida, non-antibiotic pharmaceuticals, SWATH-MS

Jianhua Guo
contact affiliation	Advanced Water Management Centre, The University of Queensland
contact email	j.guo@awmc.uq.edu.au
lab head
Jianhua Guo
contact affiliation	University of Queensland
contact email	j.guo@awmc.uq.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD012642

PRIDE project URI

• PRIDE
  1. PXD012642
     1. Label: PRIDE project
     2. Name: Proteomic analysis of E. coli K-12 LE392, P. putida KT2440 under exposure of six non-antibiotic pharmaceuticals