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DataSet Summary

  • HostingRepository: MassIVE
  • AnnounceDate: 2019-02-05
  • AnnouncementXML: Submission_2019-02-05_05:53:58.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Non peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Ondrej Vit
  • Title: Three-pronged 'Pitchfork' strategy enables an extensive description of human membrane proteome and identification of missing proteins
  • Description: In this study, we combined the transmembrane segment-oriented method hpTC with a solid phase enrichment of glycopeptides (SPEG) and standard 'detergent and trypsin' approach into a three-pronged 'Pitchfork' strategy to maximize membrane proteome coverage. The strategy enabled identification of over 1200 IMPs in human lymphoma cells.
  • SpeciesList: scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
  • ModificationList: Met->Hse; Met->Hsl; Deamidated; CarbamidomethylDTT; Homocysteic_acid
  • Instrument: Orbitrap Fusion

Dataset History

VersionDatetimeStatusChangeLog Entry
02019-02-05 05:02:33ID requested
12019-02-05 05:53:59announced

Publication List

  1. no publication

Keyword List

  1. submitter keyword: integral membrane proteins, cyanogen bromide, glycopeptide enrichment, missing proteins, mantle cell lymphoma

Contact List

    Ondrej Vit
    • contact affiliation: Charles University, First Faculty of Medicine
    • contact email: ondrej.vit@lf1.cuni.cz
    • lab head:
    Ondrej Vit
    • contact affiliation: First Facutly of Medicine, Charles University
    • contact email: ondrej.vit@lf1.cuni.cz
    • dataset submitter:

Full Dataset Link List

  1. MassIVE dataset URI
  2. Dataset FTP location

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