PXD012449

PXD012449 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Francisella noatunensis subsp orientalis FNO12 pseudogene validation
Description	Due to the detection of mRNA expression for several protein CDS annotated as pseudogenes in the results of the microarray experiment, a shotgun proteomic approach was applied to verify actual protein translation for each pseudogene in the genome of FNO12.
HostingRepository	PRIDE
AnnounceDate	2019-05-27
AnnouncementXML	Submission_2019-05-27_00:48:52.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Henrique César Pereira Figueiredo
SpeciesList	scientific name: Francisella noatunensis subsp. orientalis FNO12; NCBI TaxID: 1390363;
ModificationList	No PTMs are included in the dataset
Instrument	Synapt MS

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2019-01-21 06:45:05	ID requested
⏵ 1	2019-05-27 00:48:54	announced

Publication List

Pereira FL, Tavares GC, de Carvalho AF, Rosa JCC, Rezende CP, Leal CAG, Figueiredo HCP, Effects of temperature changes in the transcriptional profile of the emerging fish pathogen Francisella noatunensis subsp. orientalis. Microb Pathog, 133():103548(2019) [pubmed]

Pereira FL, Tavares GC, de Carvalho AF, Rosa JCC, Rezende CP, Leal CAG, Figueiredo HCP, Effects of temperature changes in the transcriptional profile of the emerging fish pathogen Francisella noatunensis subsp. orientalis. Microb Pathog, 133():103548(2019) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: HDMSe, FNO, pseudogene

curator keyword: Biological

submitter keyword: HDMSe, FNO, pseudogene

Contact List

Henrique César Pereira Figueiredo
contact affiliation	AQUACEN - National Reference Laboratory for Aquatic Animal Diseases
contact email	figueiredoh@yahoo.com
lab head
Henrique César Pereira Figueiredo
contact affiliation	National Reference Laboratory for Aquatic Animal Diseases Federal University of Minas Gerais
contact email	figueiredoh@yahoo.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD012449
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/05/PXD012449

PRIDE project URI

Repository Record List

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