PXD012285

PXD012285 is an original dataset announced via ProteomeXchange.

Title	Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-Statistics with Peptide Quantification Concordance, part 2
Description	This study presents a mathematically rigorous approach that integrates peptide MS-signal and peptide-measurement agreement into an estimation of the true protein ratio and the associated confidence.We call our method BACIQ (Bayesian Approach to Confidence Intervals for protein Quantitation – pronounced BASIC).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:56:31.398.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Meera Gupta
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2019-01-09 02:49:34	ID requested
1	2019-09-30 04:23:26	announced
⏵ 2	2024-10-22 04:56:39	announced	2024-10-22: Updated project metadata.

Peshkin L, Gupta M, Ryazanova L, W, ü, hr M, Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-statistics with Peptide Quantification Concordance. Mol Cell Proteomics, 18(10):2108-2120(2019) [pubmed]

10.1074/mcp.tir119.001317;

curator keyword: Technical

submitter keyword: baciq, pvalue,proteomics, RNC nucleus, confidence, cytoplasmic, LMB

Martin wuehr
contact affiliation	Department of Molecular Biology & the Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA
contact email	wuhr@princeton.edu
lab head
Meera Gupta
contact affiliation	Princeton University
contact email	meerag@princeton.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/09/PXD012285

PRIDE project URI

• PRIDE
  1. PXD012285
     1. Label: PRIDE project
     2. Name: Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-Statistics with Peptide Quantification Concordance, part 2