PXD012285 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-Statistics with Peptide Quantification Concordance, part 2 |
Description | This study presents a mathematically rigorous approach that integrates peptide MS-signal and peptide-measurement agreement into an estimation of the true protein ratio and the associated confidence.We call our method BACIQ (Bayesian Approach to Confidence Intervals for protein Quantitation – pronounced BASIC). |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:56:31.398.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Meera Gupta |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-01-09 02:49:34 | ID requested | |
1 | 2019-09-30 04:23:26 | announced | |
⏵ 2 | 2024-10-22 04:56:39 | announced | 2024-10-22: Updated project metadata. |
Publication List
Peshkin L, Gupta M, Ryazanova L, W, ü, hr M, Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-statistics with Peptide Quantification Concordance. Mol Cell Proteomics, 18(10):2108-2120(2019) [pubmed] |
10.1074/mcp.tir119.001317; |
Keyword List
curator keyword: Technical |
submitter keyword: baciq, pvalue,proteomics, RNC nucleus, confidence, cytoplasmic, LMB |
Contact List
Martin wuehr |
contact affiliation | Department of Molecular Biology & the Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA |
contact email | wuhr@princeton.edu |
lab head | |
Meera Gupta |
contact affiliation | Princeton University |
contact email | meerag@princeton.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/09/PXD012285 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD012285
- Label: PRIDE project
- Name: Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-Statistics with Peptide Quantification Concordance, part 2