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PXD012285

PXD012285 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleBayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-Statistics with Peptide Quantification Concordance, part 2
DescriptionThis study presents a mathematically rigorous approach that integrates peptide MS-signal and peptide-measurement agreement into an estimation of the true protein ratio and the associated confidence.We call our method BACIQ (Bayesian Approach to Confidence Intervals for protein Quantitation – pronounced BASIC).
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:56:31.398.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMeera Gupta
SpeciesList scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListTMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-01-09 02:49:34ID requested
12019-09-30 04:23:26announced
22024-10-22 04:56:39announced2024-10-22: Updated project metadata.
Publication List
Peshkin L, Gupta M, Ryazanova L, W, ü, hr M, Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-statistics with Peptide Quantification Concordance. Mol Cell Proteomics, 18(10):2108-2120(2019) [pubmed]
10.1074/mcp.tir119.001317;
Keyword List
curator keyword: Technical
submitter keyword: baciq, pvalue,proteomics, RNC nucleus, confidence, cytoplasmic, LMB
Contact List
Martin wuehr
contact affiliationDepartment of Molecular Biology & the Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA
contact emailwuhr@princeton.edu
lab head
Meera Gupta
contact affiliationPrinceton University
contact emailmeerag@princeton.edu
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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