PXD011889

PXD011889 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Analysis of microbial communities from a methane-fed bio-reactor with metagenomes and metaproteomics
Description	In this study, we analyzed the microbial communities from a methane-based bio-reactor with selenate as an electron accepter. Four biological replicates were analyzed by metagenomics, of which data can be found in the SRA database (Accession number: SRP136677, SRP136696, SRP136790 and SRP136859). Based on the metagenomic data, we detected the expressed proteins using metaproteomics. This data is also included in this submission.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:49:50.883.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	xiaonan fu
SpeciesList	scientific name: Methylocystis sp.; NCBI TaxID: 1911079; scientific name: Pseudoxanthomonas sp.; NCBI TaxID: 1871049; scientific name: Meiothermus sp.; NCBI TaxID: 1955249;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive Plus

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-11-29 07:22:06	ID requested
1	2022-03-01 10:10:07	announced
⏵ 2	2023-11-14 08:49:51	announced	2023-11-14: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: 1D-LC, methane oxidation, metagenomics, metaproteomics, selenate reduction

submitter keyword: 1D-LC, methane oxidation, metagenomics, metaproteomics, selenate reduction

Contact List

Ling-Dong Shi
contact affiliation	Department of Environmental Engineering, College of Environmental and Resource Science, Zheijiang University
contact email	shild@zju.edu.cn
lab head
xiaonan fu
contact affiliation	zhejiang scientific technology universitiy
contact email	2016460649@qq.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD011889
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD011889

PRIDE project URI

Repository Record List

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