PXD011824

PXD011824 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1
Description	The marine obligate hydrocarbonoclastic bacterium Thalassolituus oleivorans MIL-1 metabolises a broad range of aliphatic hydrocarbons almost exclusively as carbon and energy sources. We used LC-MS/MS shotgun proteomics to identify proteins involved in aerobic alkane degradation during growth on medium- (n-C14) or long-chain (n-C28) alkanes.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:51:19.036.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Benjamin Gregson
SpeciesList	scientific name: Thalassolituus oleivorans MIL-1; NCBI TaxID: 1298593;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-11-26 02:07:42	ID requested
1	2019-01-14 03:08:47	announced
⏵ 2	2024-10-22 04:51:22	announced	2024-10-22: Updated project metadata.

Publication List

Gregson BH, Metodieva G, Metodiev MV, Golyshin PN, McKew BA, MIL-1. Front Microbiol, 9():3130(2018) [pubmed]
10.3389/fmicb.2018.03130;

Gregson BH, Metodieva G, Metodiev MV, Golyshin PN, McKew BA, MIL-1. Front Microbiol, 9():3130(2018) [pubmed]

10.3389/fmicb.2018.03130;

Keyword List

curator keyword: Biological
submitter keyword: shotgun proteomics, alkane degradation, subterminal oxidation, oil pollution, medium-chain alkanes, hydrocarbonoclastic bacteria,Thalassolituus oleivorans, long-chain alkanes

curator keyword: Biological

submitter keyword: shotgun proteomics, alkane degradation, subterminal oxidation, oil pollution, medium-chain alkanes, hydrocarbonoclastic bacteria,Thalassolituus oleivorans, long-chain alkanes

Contact List

Boyd McKew
contact affiliation	School of Biological Sciences, University of Essex, Colchester, UK
contact email	boyd.mckew@essex.ac.uk
lab head
Benjamin Gregson
contact affiliation	University of Essex
contact email	bgregs@essex.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011824
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD011824

PRIDE project URI

Repository Record List

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