PXD011760

PXD011760 is an original dataset announced via ProteomeXchange.

Title	Fumarate effect on the Escherichia coli proteome at aerobic and anaerobic growth conditions
Description	The changes in protein composition of E. coli were studied in a global proteomic approach for aerobic growth without or with fumarate as carbon source (glycerol + O2, fumarate + O2, respectively) and anaerobic growth without or with fumarate as carbon source (glycerol + DMSO, glycerol + DMSO + fumarate, respectively). The experiments should unravel the changes in response to fumarate under aerobic (i) and anaerobic (ii) conditions, and more generally (iii) the fumarate proteome under aerobic versus anaerobic conditions. Fumarate was used as the C4DC due to its capability to support aerobic and anaerobic growth, and glycerol was used as the alternative carbon source that exerts no or only weak carbon catabolite repression.
HostingRepository	PRIDE
AnnounceDate	2019-11-20
AnnouncementXML	Submission_2019-11-20_01:41:14.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Elke Hammer
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Synapt MS

Revision	Datetime	Status	ChangeLog Entry
0	2018-11-20 03:13:45	ID requested
⏵ 1	2019-11-20 01:41:15	announced

Surmann K, Stopp M, W, ö, rner S, Dhople VM, V, ö, lker U, Unden G, Hammer E, Fumarate dependent protein composition under aerobic and anaerobic growth conditions in Escherichia coli. J Proteomics, 212():103583(2020) [pubmed]

curator keyword: Biological

submitter keyword: aerobic/anaerobic growth

C4-dicarboxylates, Escherichia coli

fumarate metabolism, LC-UDMSe

Elke Hammer
contact affiliation	University Medicine Greifswald, Department of Functional Genomics
contact email	hammer@uni-greifswald.de
lab head
Elke Hammer
contact affiliation	Dept. of Functional Genomics
contact email	hammer@uni-greifswald.de
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD011760
     1. Label: PRIDE project
     2. Name: Fumarate effect on the Escherichia coli proteome at aerobic and anaerobic growth conditions