PXD011747

PXD011747 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Integrated proteomic/lipidomics reveal that the swarming motility of Paenibacillus polymyxa is driven by phospholipid changes, surfactants, and flagellar specialization
Description	To better understand the molecular-level details of the swarming phenotype in P. polymyxa,m this study was designed to use a bioinformatics approach to integrate proteomics and lipidomics datasets generated for P. polymyxa grown in liquid swimming culture bacteria vs. swarming on agar platesbacteria. Integration of omics datasets unraveled the growth condition dependent phospholipid metabolism and possible membrane remodulation. Further, this study identifies the possible roles of GHs, flagellar assembly, chemotaxis and production of wetting agents and surfactants in swarming motility along with the validation from gene expression using RT-PCR.
HostingRepository	MassIVE
AnnounceDate	2019-08-14
AnnouncementXML	Submission_2019-08-14_08:46:15.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Suresh Poudel
SpeciesList	scientific name: Paenibacillus polymyxa ATCC 842; NCBI TaxID: 1036171;
ModificationList	Carbamidomethyl; L-methionine sulfoxide
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-11-19 09:58:44	ID requested
⏵ 1	2019-08-14 08:46:16	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: Paenibacillus polymyxa, proteomics, lipidomics, bioinformatics, swarming, swimming, Glycoside hydrolase, polyketide synthase, surfactant, flagella, chemotaxis, lantibiotics

submitter keyword: Paenibacillus polymyxa, proteomics, lipidomics, bioinformatics, swarming, swimming, Glycoside hydrolase, polyketide synthase, surfactant, flagella, chemotaxis, lantibiotics

Contact List

Robert L. Hettich
contact affiliation	Oak Ridge National Laboratory
contact email	hettichrl@ornl.gov
lab head
Suresh Poudel
contact affiliation	Oak Ridge National Lab
contact email	poudels@ornl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000083145/