PXD011708

PXD011708 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	proteome analysis adductor muscle color in Boihai Red Scall
Description	Boihai Red is new strains of inter-specific hybridizing the bay scallop (Argopecten irradians irradians) with the Peruvian scallop (Argopecten purpuratus). Orange color variant of adductor muscle have been developed through successive selective breeding in this strain. In the present study,proteomic were conducted on orange and white adductor muscle tissues.Notably, 74 differentially expressed proteins (DEPs) were identified by lable free proteomics, including 36 up and 38 down regulated. In DEGs, apolipophorin, CYP450 and tyrosinase were expressed highly in orange adductor muscle tissues, which related to carotenoids or melanin. In DEPs, high expression of VPS and TIF in orange adductor muscle tissues indicated that proteins outside the carotenoid pathway might also affect carotenoid biosynthesis. In addition, RAB11A related to melanin was also expressed highly in orange adductor muscle tissues at protein level. It is probable that not only carotenoids, but also melanin act on orange color of adductor muscle. This study provides valuable genetic resources for understanding underlying mechanisms and pathways of adductor muscle color.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:50:26.333.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	JunLin Song
SpeciesList	scientific name: Argopecten irradians; NCBI TaxID: 31199;
ModificationList	monohydroxylated residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-11-15 01:48:07	ID requested
1	2019-11-12 15:33:29	announced
⏵ 2	2024-10-22 04:50:27	announced	2024-10-22: Updated project metadata.

Publication List

Song J, Wang C, Transcriptomic and proteomic analyses of genetic factors influencing adductor muscle coloration in QN Orange scallops. BMC Genomics, 20(1):363(2019) [pubmed]
10.1186/s12864-019-5717-y;

Song J, Wang C, Transcriptomic and proteomic analyses of genetic factors influencing adductor muscle coloration in QN Orange scallops. BMC Genomics, 20(1):363(2019) [pubmed]

10.1186/s12864-019-5717-y;

Keyword List

curator keyword: Biological
submitter keyword: proteome analysis，adductor muscle color

curator keyword: Biological

submitter keyword: proteome analysis，adductor muscle color

Contact List

JunLin Song
contact affiliation	Qingdao Agricultural University , China
contact email	495717198@qq.com
lab head
JunLin Song
contact affiliation	Qingdao Agricultural University
contact email	495717198@qq.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD011708
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD011708

PRIDE project URI

Repository Record List

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