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PXD011695

DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2019-05-15
  • AnnouncementXML: Submission_2019-05-17_04:49:31.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Dain Brademan
  • Title: Interactive Peptide Spectral Annotator Experimental Data
  • Description: Abstract Here we present IPSA, an innovative web-based spectrum annotator that visualizes and characterizes peptide tandem mass spectra. A tool for the scientific community, IPSA can visualize peptides collected using a wide variety of experimental and instrumental configurations. Annotated spectra are customizable via a selection of interactive features and can be exported as editable scalable vector graphics to aid in the production of publication-quality figures. Single spectra can be analyzed through provided forms, while multiple peptide spectral matches can be uploaded directly to the server as CSV, MGF, or mzML files. IPSA facilitates the characterization of experimental MS/MS performance through the optional export of fragment ion statistics from one to many peptide spectral matches. This resource is made freely accessible at http://interactivepeptidespectralannotator.com, and the source code is available for inspection at https://github.com/dbrademan/IPSA-dev for custom implementations. This repository contains the raw data, sequence databases, and peptide identifications utilized in the manuscript.
  • SpeciesList: scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
  • ModificationList: monohydroxylated residue; iodoacetamide derivatized residue
  • Instrument: Q Exactive; LTQ Orbitrap Elite

Dataset History

VersionDatetimeStatusChangeLog Entry
02018-11-14 03:20:54ID requested
12019-05-15 00:01:12announced
22019-05-17 04:49:33announcedUpdated publication reference for PubMed record(s): 31088857.

Publication List

  1. Brademan DR, Riley NM, Kwiecien NW, Coon JJ, Interactive Peptide Spectral Annotator: A Versatile Web-Based Tool for Proteomic Applications. Mol Cell Proteomics, ():(2019) [pubmed]

Keyword List

  1. submitter keyword: Shotgun Proteomics, HCD, ETD, EThcD, ETcaD, AI-ETD, AI-ETD+, NETD

Contact List

    Joshua J. Coon
    • contact affiliation: Department of Chemistry, University of Wisconsin–Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53715, USA Genome Center of Wisconsin, Madison, WI 53706, USA Department of Biomolecular Chemistry, University of Wisconsin–Madison, Madison, WI 53706, USA
    • contact email: coon@wisc.edu
    • lab head:
    Dain Brademan
    • contact affiliation: UW-Madison Joshua J. Coon Research Group Chemistry Department
    • contact email: brademan@wisc.edu
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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