PXD011680

PXD011680 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Intermolecular Architecture of Fibrin Clots and its Interaction INterface with Albumin
Description	In this project we establish the unit cell of fibrin polymer network by using of XL-MS methods and modelling approaches. With shotgun proteomics approach we estimate the ratio of proteins in the purified Fibrin Clots and ratio of Albumin inter- and intralinks
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:54:59.951.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Oleg Klykov
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos; Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-11-13 05:36:02	ID requested
1	2020-01-09 10:15:41	announced
2	2020-01-17 06:12:20	announced	2020-01-17: Updated publication reference for PubMed record(s): 31924745.
3	2020-02-17 02:25:51	announced	2020-01-17: Updated publication reference for PubMed record(s): 31924745. 2020-02-17: Updated publication reference for PubMed record(s): 31924745.
4	2020-11-06 08:13:19	announced	2020-11-06: Updated project metadata.
5	2022-02-13 16:19:16	announced	2022-02-14: Updated project metadata.
6	2022-02-13 16:27:29	announced	2022-02-14: Updated project metadata.
⏵ 7	2024-10-22 04:55:08	announced	2024-10-22: Updated project metadata.

Publication List

Klykov O, van der Zwaan C, Heck AJR, Meijer AB, Scheltema RA, Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling. Proc Natl Acad Sci U S A, 117(4):1976-1987(2020) [pubmed]
10.1073/pnas.1911785117;

Klykov O, van der Zwaan C, Heck AJR, Meijer AB, Scheltema RA, Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling. Proc Natl Acad Sci U S A, 117(4):1976-1987(2020) [pubmed]

10.1073/pnas.1911785117;

Keyword List

ProteomeXchange project tag: EPIC-XS
submitter keyword: Docking,XL-MS, Albumin, DSSO, Fibrin, Modeling, Fibrinogen

ProteomeXchange project tag: EPIC-XS

submitter keyword: Docking,XL-MS, Albumin, DSSO, Fibrin, Modeling, Fibrinogen

Contact List

Albert J. R. Heck
contact affiliation	Distinguished Faculty Professor Utrecht University Scientific Director Netherlands Proteomics Centre and Scientific Director Utrecht Institute for Pharmaceutical Sciences Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences Utrecht University Padualaan 8, 3584 CH Utrecht, The Netherlands
contact email	A.J.R.Heck@uu.nl
lab head
Oleg Klykov
contact affiliation	Utrecht University
contact email	o.klykov@uu.nl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD011680
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/01/PXD011680

PRIDE project URI

Repository Record List

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