PXD011638

PXD011638 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	In-depth analysis of HeLa cell proteome
Description	The tryptic peptide mixture from HeLa cells was fractionated using a High pH Reversed-Phase Peptide Fractionation Kit (Thermo Fisher Scientific). Each peptide fraction was subjected to LC-MS/MS in triplicate using a Q Exactive Orbitrap mass spectrometer (Thermo Fisher Scientific) equipped with an UltiMate 3000 liquid chromatograph (Thermo Fisher Scientific). LC-MS/MS data were integrated on a Progenesis QI for proteomics software (Waters), followed by sequence database search of the MS/MS data using Mascot software (Matrix Science). The search results showed identification of the total of 6151 protein groups, filtered at 1% false discovery rate (FDR) peptide threshold.
HostingRepository	jPOST
AnnounceDate	2018-11-09
AnnouncementXML	Submission_2022-09-18_03:37:10.629.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Kouhei Nishino
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; iodoacetamide derivatized amino-terminal residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-11-08 23:36:11	ID requested
1	2018-11-08 23:36:15	announced
2	2021-02-04 17:33:14	announced	2021-02-04: Updated FTP location.
⏵ 3	2022-09-18 03:37:10	announced	2022-09-18: Updated FTP location.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: HeLa cells, deep proteomics, peptide fractionation

submitter keyword: HeLa cells, deep proteomics, peptide fractionation

Contact List

Takao Kawakami
lab head
Kouhei Nishino
contact affiliation	Medical ProteoScope Co., Ltd.
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST000518/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST000518/