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PXD011556

PXD011556 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleBacteriocin LC-MSMS .
DescriptionThis is the first report of a bacteriocin being produced by lactobacillus acidophilus ATCC 4356. For protein identification, the ~8-kDa peptide band was removed from the acrylamide gel and digested in-gel by trypsin, and the resulting peptide fragments were extracted and analyzed by LC-MS/MS analysis. The MS data were processed using Thermo Proteome Discoverer software (v2.2) with the SEQUEST search engine. Three peptides, VAHCASQIGR (amino acids 23-32), GSAACVSYLTR (amino acids 69-79), GSAACVSYLTRHRHH (amino acids 69-83) were identified as tryptic fragments on the basis of LC-MS/MS.This is the first report of a bacteriocin being produced by lactobacillus acidophilus ATCC 4356. For protein identification, the ~8-kDa peptide band was removed from the acrylamide gel and digested in-gel by trypsin, and the resulting peptide fragments were extracted and analyzed by LC-MS/MS analysis. The MS data were processed using Thermo Proteome Discoverer software (v2.2) with the SEQUEST search engine. Three peptides, VAHCASQIGR (amino acids 23-32), GSAACVSYLTR (amino acids 69-79), GSAACVSYLTRHRHH (amino acids 69-83) were identified as tryptic fragments on the basis of LC-MS/MS.
HostingRepositoryPRIDE
AnnounceDate2024-10-07
AnnouncementXMLSubmission_2024-10-07_10:20:26.038.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSima Modiri
SpeciesList scientific name: Lactobacillus acidophilus; NCBI TaxID: 1579;
ModificationListNo PTMs are included in the dataset
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-11-01 03:13:06ID requested
12024-10-07 10:20:26announced
Publication List
10.1128/aem.00367-20;
Keyword List
curator keyword: Biological
submitter keyword: Lactobacillus acidophilus atcc 4356,Bacteriocin
Contact List
Kambiz Akbari Noghabi
contact affiliationDivision of Industrial & Environmental Biotechnology, National Institute of Genetic Engineering and Biotechnology (NIGEB), P. O. Box 14155-6343, Tehran, Iran
contact emailakbari@nigeb.ac.ir
lab head
Sima Modiri
contact affiliationNIGEB
contact emailmodiri.sima@gmail.com
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
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