PXD011436

PXD011436 is an original dataset announced via ProteomeXchange.

Title	Proteomics of nitrogen metabolism in rhizosphere bacteria
Description	In this study we use proteomics to study nitrogen metabolism in three taxonomically diverse bacterial strains previously isolated from Arabidopsis roots. The strains were cultivated on five different nitrogen sources (ammonium, glutamate, lysine, serine and urea), and label-free quantitative proteomics was used to profile cellular protein composition.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:00:53.570.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Richard Jacoby
SpeciesList	scientific name: Pseudomonas sp. Root9; NCBI TaxID: 1736604; scientific name: Rhizobium sp. Root491; NCBI TaxID: 1736548; scientific name: Streptomyces sp. Root66D1; NCBI TaxID: 1736582;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2018-10-22 02:53:37	ID requested
1	2020-03-19 07:05:54	announced
2	2020-06-12 02:56:41	announced	2020-06-12: Updated publication reference for PubMed record(s): 32411116.
⏵ 3	2024-10-22 05:00:58	announced	2024-10-22: Updated project metadata.

Jacoby RP, Succurro A, Kopriva S, Nitrogen Substrate Utilization in Three Rhizosphere Bacterial Strains Investigated Using Proteomics. Front Microbiol, 11():784(2020) [pubmed]

10.3389/fmicb.2020.00784;

submitter keyword: Nitrogen

Bacteria

Metabolism

Amino acids

Proteomics

Mass spectrometry

Rhizosphere microbiome

Bacterial root microbiota

Stanislav Kopriva
contact affiliation	University of Cologne, Botanical Institute and CEPLAS
contact email	skopriva@uni-koeln.de
lab head
Richard Jacoby
contact affiliation	University of Cologne
contact email	rjacoby@uni-koeln.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/03/PXD011436

PRIDE project URI

• PRIDE
  1. PXD011436
     1. Label: PRIDE project
     2. Name: Proteomics of nitrogen metabolism in rhizosphere bacteria