PXD011343
PXD011343 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | The parallel reaction monitoring assays in heterosis of hybrid yellow catfish Huangyou-1 |
Description | Heterosis is a complex biological phenomenon in which hybridization exhibits superior phenotypic characteristics. The underlying molecular basis for heterosis, particularly for fishes, remains elusive. The utilization rate of fish heterosis far exceeds our understanding of it on a theoretical level. To gain a comprehensive and unbiased molecular understanding of fish heterosis, we characterized mRNA-seq, miRNA-seq, and proteomes of Pelteobagrus fulvidraco, P. vachelli, and the hybrid yellow catfish Huangyou-1 (P. fulvidraco ♀×P. vachelli ♂) livers using next-generation sequencing technologies and tandem mass tags. Our results show that the nonadditive, homoeologue expression bias and expression level dominance pattern were readily identified in transcriptional, post-transcriptional, or protein levels, providing the evidence for the widespread presence of dominant models during hybridization. At the same time, a number of miRNA-mRNA-protein pairs were found and validated by qRT-PCR and parallel reaction monitoring assays. |
HostingRepository | iProX |
AnnounceDate | 2019-04-26 |
AnnouncementXML | Submission_2019-12-11_21:45:18.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Shaowu Yin |
SpeciesList | scientific name: Tachysurus fulvidraco; NCBI TaxID: 1234273; scientific name: Tachysurus fulvidraco x Tachysurus vachelli; NCBI TaxID: 1610892; scientific name: Tachysurus vachellii; NCBI TaxID: 175792; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2018-10-11 20:36:41 | ID requested | |
1 | 2018-10-11 20:37:19 | announced | |
2 | 2019-04-25 22:49:35 | announced | Update data files. |
⏵ 3 | 2019-12-11 21:45:19 | announced | 2019-12-12: Update publication information. |
Publication List
Zhang G, Li J, Zhang J, Liang X, Zhang X, Wang T, Yin S, Integrated Analysis of Transcriptomic, miRNA and Proteomic Changes of a Novel Hybrid Yellow Catfish Uncovers Key Roles for miRNAs in Heterosis. Mol Cell Proteomics, 18(7):1437-1453(2019) [pubmed] |
Keyword List
submitter keyword: parallel reaction monitoring, heterosis, proteome, hybrid catfish |
Contact List
Shaowu Yin | |
---|---|
contact affiliation | Nanjing normal university |
contact email | yinshaowu@163.com |
lab head | |
Shaowu Yin | |
contact affiliation | Nanjing normal university |
contact email | yinshaowu@163.com |
dataset submitter |
Full Dataset Link List
iProX dataset URI |