PXD011268

PXD011268 is an original dataset announced via ProteomeXchange.

Title	Proteomics of psychrotolerant Trichococcus patagoniensis and characterization of the produced exopolysaccharides as inulin
Description	The psychrotolerant Trichococcus patagoniensis was previously reported to produce exopolysaccharides (EPS) that covers the cells, when grown at a low temperature. Although, T. patagoniensis has an optimal growth at 30 ºC, it still can grow at -5 ºC. This capability of T. patagoniensis to grow at subzero temperatures is expected to be reflected in the proteome, membrane lipid composition and/or EPS production. This study aimed to get insight into the cold adaptation mechanisms of T. patagoniensis. We compared the proteomes of cells grown at 0 and 30 ºC and the EPS that is formed.
HostingRepository	PRIDE
AnnounceDate	2022-08-12
AnnouncementXML	Submission_2022-08-12_02:27:20.018.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sjef Boeren
SpeciesList	scientific name: Trichococcus patagoniensis; NCBI TaxID: 382641;
ModificationList	monohydroxylated residue; acetylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2018-10-03 08:06:43	ID requested
⏵ 1	2022-08-12 02:27:20	announced

Doloman A, Boeren S, Miller CD, Sousa DZ, . Appl Environ Microbiol, 88(13):e0039122(2022) [pubmed]

submitter keyword: cold-adaption, psychrophilic, glucose, cold-shock, sub-zero, lipids, genomics

Sjef Boeren
contact affiliation	Wageningen University
contact email	sjef.boeren@wur.nl
lab head
Sjef Boeren
contact affiliation	Biochemistry
contact email	sjef.boeren@wur.nl
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD011268
     1. Label: PRIDE project
     2. Name: Proteomics of psychrotolerant Trichococcus patagoniensis and characterization of the produced exopolysaccharides as inulin