PXD011214

PXD011214 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Urinary glycopeptide analysis for the investigation of novel biomarkers
Description	The aim of this study was to investigate the presence of intact O- and N-glycopeptides in profiles of normal human urine analyzed by capillary electrophoresis coupled to mass spectrometry (CE-MS).CE and liquid chromatography coupled to tandem mass spectrometry (CE- and LC-MS/MS) were both used to identify glycopeptide sequences. Furthermore, we estimated the abundance levels of these glycopeptides in urine from five different cancer types i.e. bladder cancer (BCa), prostate cancer (PCa), pancreatic cancer, cholangiocarcinoma (CC) and renal cell carcinoma (RCC).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:49:08.908.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Martin Pejchinovski
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Hex1HexNAc2 N4-glycosylated asparagine; Hex1HexNAc1NeuAc1 glycosylated residue; O-hexosylated threonine; O-(N-acetylamino)glucosyl-L-threonine; O-(N-acetylamino)glucosyl-L-serine; monohydroxylated residue; N-acetylneuraminylated residue
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-09-28 05:20:12	ID requested
1	2018-11-29 02:44:37	announced
⏵ 2	2024-10-22 04:49:14	announced	2024-10-22: Updated project metadata.

Publication List

10.1002/prca.201800111;
Belczacka I, Pejchinovski M, Krochmal M, Magalh, ã, es P, Frantzi M, Mullen W, Vlahou A, Mischak H, Jankowski V, Urinary Glycopeptide Analysis for the Investigation of Novel Biomarkers. Proteomics Clin Appl, 13(3):e1800111(2019) [pubmed]

10.1002/prca.201800111;

Belczacka I, Pejchinovski M, Krochmal M, Magalh, ã, es P, Frantzi M, Mullen W, Vlahou A, Mischak H, Jankowski V, Urinary Glycopeptide Analysis for the Investigation of Novel Biomarkers. Proteomics Clin Appl, 13(3):e1800111(2019) [pubmed]

Keyword List

curator keyword: Biomedical
submitter keyword: glycosylation,glycopeptides, urine, posttranslational modifications, protein biomarkers

curator keyword: Biomedical

submitter keyword: glycosylation,glycopeptides, urine, posttranslational modifications, protein biomarkers

Contact List

Martin Pejchinovski
contact affiliation	Clinical Proteomics, Mosaiques Diagnostics GmbH
contact email	pejchinovski@mosaiques-diagnostics.com
lab head
Martin Pejchinovski
contact affiliation	Mosaiques Diagnostics GmbH
contact email	pejchinovski@mosaiques-diagnostics.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD011214
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD011214

PRIDE project URI

Repository Record List

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