PXD011213

PXD011213 is an original dataset announced via ProteomeXchange.

Title	Structural and functional differentiation of the light-harvesting protein Lhcb4 during land plant diversification
Description	About 475 million years ago plants originated from an ancestral green alga and evolved first as non-vascular and later as vascular plants, becoming the primary producers of biomass on lands. During that time, the light harvesting complex II (LHCII), responsible for sunlight absorption and excitation energy transfer to the Photosystem II (PSII) core, underwent extensive differentiation. Lhcb4 is an ancestral ubiquitous LHCII that during plant diversification continued to change, finally differentiating in flowering plants in up to three isoforms, Lhcb4.1, Lhcb4.2 and Lhcb4.3. The pivotal position of Lhcb4 in the PSII-LHCII supercomplex (PSII-LHCIIsc), as linker for S- and M-trimers of LHCII to the PSII core, suggests its major role in light harvesting modulation. The increased accumulation of Lhcb4.3 observed in PSII-LHCIIsc of plants acclimated to moderate and high light intensities induced us to investigate whether this isoform is present in a specific PSII-LHCIIsc conformation that might explain its light-dependent accumulation. In this work, by combining an improved method for separation of different forms of PSII-LHCIIsc from thylakoids of Pisum sativum grown at increasing irradiances with quantitative proteomics, we assessed that Lhcb4.3 is abundant in PSII-LHCIIsc of type C2S2, irrespective of the plant growth irradiance. Phylogenetic comparative analysis on different taxa of the Viridiplantae lineage and structural modelling further pointed out to an effect of the evolution of different Lhcb4 isoforms on the light-dependent modulation of the PSII-LHCIIsc organization. This information provides new insight on the properties of the Lhcb4 and its isoforms and their role on the structure, function and regulation of PSII.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:48:56.690.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pascal Albanese
SpeciesList	scientific name: Pisum sativum (Garden pea); NCBI TaxID: 3888;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2018-09-28 05:19:58	ID requested
1	2019-03-25 06:20:14	announced
⏵ 2	2024-10-22 04:49:00	announced	2024-10-22: Updated project metadata.

10.1111/ppl.12964;

Albanese P, Manfredi M, Marengo E, Saracco G, Pagliano C, Structural and functional differentiation of the light-harvesting protein Lhcb4 during land plant diversification. Physiol Plant, 166(1):336-350(2019) [pubmed]

curator keyword: Biological

submitter keyword: proteomics, light acclimation, SWATH,PSII, land plants evolution, label-free, LHCII, light harvesting

Cristina Pagliano
contact affiliation	Politecnico di Torino
contact email	cristina.pagliano@polito.it
lab head
Pascal Albanese
contact affiliation	Politecnico di Torino
contact email	pascal.albanese@polito.it
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/03/PXD011213

PRIDE project URI

• PRIDE
  1. PXD011213
     1. Label: PRIDE project
     2. Name: Structural and functional differentiation of the light-harvesting protein Lhcb4 during land plant diversification