PXD011163

PXD011163 is an original dataset announced via ProteomeXchange.

Title	Proteome and phosphoproteome dynamics of CVB3 infected cells
Description	Viruses are obligate intracellular parasites that reshape the ultrastructure, composition and metabolism of host cells to suit their specific needs, although disparate viruses may modify their host in different ways. Such changes may be specifically induced by the virus to support the infection or be part of cellular antiviral responses or stress responses. Here, using state-of-the-art quantitative (phospho)proteomics, we reveal the unique proteome and phosphoproteome dynamics that occur in the host cells infected with the enterovirus coxsackievirus B3 (CVB3).
HostingRepository	PRIDE
AnnounceDate	2020-07-23
AnnouncementXML	Submission_2020-09-01_04:43:48.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Piero Giansanti
SpeciesList	scientific name: Coxsackievirus B3; NCBI TaxID: 12072; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue
Instrument	Orbitrap Fusion; Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2018-09-24 01:36:58	ID requested
1	2020-07-23 00:14:13	announced
⏵ 2	2020-09-01 04:43:49	announced	2020-09-01: Updated publication reference for PubMed record(s): 32859902.

Giansanti P, Strating JRPM, Defourny KAY, Cesonyte I, Bottino AMS, Post H, Viktorova EG, Ho VQT, Langereis MA, Belov GA, Nolte-'t Hoen ENM, Heck AJR, van Kuppeveld FJM, Dynamic remodelling of the human host cell proteome and phosphoproteome upon enterovirus infection. Nat Commun, 11(1):4332(2020) [pubmed]

curator keyword: Biological, Biomedical

submitter keyword: CVB3, proteome, phosphoproteome, HeLa, mTOR, virus, mass spectrometry

Albert J. R. Heck
contact affiliation	Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands
contact email	A.J.R.Heck@uu.nl
lab head
Piero Giansanti
contact affiliation	Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands
contact email	p.giansanti@uu.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/07/PXD011163

PRIDE project URI

• PRIDE
  1. PXD011163
     1. Label: PRIDE project
     2. Name: Proteome and phosphoproteome dynamics of CVB3 infected cells