PXD011080

PXD011080 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Building comprehensive MS-friendly databases for proteomic analysis of bacterial species of unknown genetic background
Description	Computational approach to build non-redundant protein databases for strains with unknown genomic background
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:48:20.385.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Gustavo De Souza
SpeciesList	scientific name: Mycobacterium tuberculosis; NCBI TaxID: 1773;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-09-13 02:13:57	ID requested
1	2019-11-12 14:01:26	announced
⏵ 2	2024-10-22 04:48:21	announced	2024-10-22: Updated project metadata.

Publication List

Machado KCT, Fortuin S, Tomazella GG, Fonseca AF, Warren RM, Wiker HG, de Souza SJ, de Souza GA, On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics. Front Microbiol, 10():1410(2019) [pubmed]
10.3389/fmicb.2019.01410;

Machado KCT, Fortuin S, Tomazella GG, Fonseca AF, Warren RM, Wiker HG, de Souza SJ, de Souza GA, On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics. Front Microbiol, 10():1410(2019) [pubmed]

10.3389/fmicb.2019.01410;

Keyword List

curator keyword: Technical, Biological
submitter keyword: bacterial strains, pangenomics,proteogenomics, databases

curator keyword: Technical, Biological

submitter keyword: bacterial strains, pangenomics,proteogenomics, databases

Contact List

Gustavo de Souza
contact affiliation	Dept. of Biochemistry, Universidade Fereal do Rio Grande do Norte
contact email	gadsouza@gmail.com
lab head
Gustavo De Souza
contact affiliation	Dept. of Biochemistry, Federal University of Rio Grande do Norte
contact email	gadsouza@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD011080
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD011080

PRIDE project URI

Repository Record List

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