PXD011038 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Detection of SEPs by MS (Second Round) |
Description | Identifying smORFs and SEPs is technically and computationally challenging. Experimentally, techniques as ribosome profiling (Ribo-Seq and mass spectroscopy (MS) are used. Ribo-Seq sequences the mRNA and does not provide the translated frame, thus identifying proteins encoded by overlapping ORFs is not feasible. Herein we have used MS to characterize smORFomes of different Mycoplasma species, Escherichia coli, Staphylococcus aureus and Pseudomonas aeruginosa. This data is used to corroborate the predictions of a random forest classifier that in silico predicts all the putative SEPs encoded by different bacterial genomes. |
HostingRepository | PRIDE |
AnnounceDate | 2019-10-14 |
AnnouncementXML | Submission_2019-10-14_01:05:36.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Samuel Miravet Verde |
SpeciesList | scientific name: Staphylococcus aureus; NCBI TaxID: 1280; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-09-10 01:15:51 | ID requested | |
⏵ 1 | 2019-10-14 01:05:37 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Technical, Biological |
submitter keyword: SEPs, Staphylococcus aureus, Pseudomonas aeruginosa |
Contact List
Luis Serrano |
contact affiliation | Design of Biological Systems, Centre for Genomic Regulation, Barcelona (Spain) |
contact email | luis.serrano@crg.eu |
lab head | |
Samuel Miravet Verde |
contact affiliation | Centre for Genomic Regulation |
contact email | samuel.miravet@crg.eu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD011038
- Label: PRIDE project
- Name: Detection of SEPs by MS (Second Round)