PXD010941 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Enhanced RNA Interactome capture (eRIC) and RNA Interactome capture (RIC) of Jurkat cells (DSMZ, ACC-282). |
Description | 1.0 – 1.3 x 10e8 proliferating Jurkat cells at a density of about 1-1.5 x 10e6 cells/mL were employed per sample. Cells were irradiated or not with 254 nm UV light and subjected to eRIC or RIC to determine the RNA-bound proteome. Data correspond to two biologically independent experiments. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:07:38.334.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Frank Stein |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-08-30 02:29:34 | ID requested | |
1 | 2018-09-03 04:00:31 | announced | |
2 | 2018-09-11 00:36:24 | announced | Updated project metadata. |
3 | 2018-11-04 14:48:23 | announced | Updated project metadata. |
⏵ 4 | 2024-10-22 04:07:39 | announced | 2024-10-22: Updated project metadata. |
Publication List
Perez-Perri JI, Rogell B, Schwarzl T, Stein F, Zhou Y, Rettel M, Brosig A, Hentze MW, Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture. Nat Commun, 9(1):4408(2018) [pubmed] |
10.1038/s41467-018-06557-8; |
Keyword List
curator keyword: Biomedical |
submitter keyword: RIC, eRIC,RNA interactome, RBPs, RBPome, RNA-binding proteins |
Contact List
Matthias W. Hentze |
contact affiliation | European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. |
contact email | hentze@embl.de |
lab head | |
Frank Stein |
contact affiliation | EMBL |
contact email | frank.stein@embl.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD010941 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD010941
- Label: PRIDE project
- Name: Enhanced RNA Interactome capture (eRIC) and RNA Interactome capture (RIC) of Jurkat cells (DSMZ, ACC-282).