PXD010920

PXD010920 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteome profiling of cultivated Echerichia coli isolates from Crohn's disease patients
Description	One of the dysbioses often observed in CD patients is an increased abundance of Escherichia coli (10-100 fold compared to healthy individuals) [Gevers et al., 2014]. E. coli isolates collected from CD and healthy patients were cultivated on LB medium at aerobic conditions up to medium log phase and their total proteomes were analysed by shotgun proteomics by HPLC-MS/MS. Refs. Gevers D, Kugathasan S, Denson LA, Vazquez-Baeza Y, Van Treuren W, Ren B, et al. The treatment-naive microbiome in new-onset Crohn’s disease. 2014. Cell Host Microbe 15: 382–92.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:06:30.212.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD010920
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Daria Rakitina
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	Oxidation; Carbamidomethyl
Instrument	maXis

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-08-29 02:12:27	ID requested
1	2019-08-15 02:39:18	announced
⏵ 2	2024-10-22 04:06:38	announced	2024-10-22: Updated project metadata.

Publication List

10.6019/PXD010920;
10.1016/j.dib.2019.103734;
Rakitina D, Baikova J, Pobeguts O, Bukato O, Butenko I, Garanina I, Levites M, Manolov A, Kanygina A, Kostryukova E, Semashko T, Karpova I, Babenko V, Scherbakov P, Khalif I, Shapina M, Parfenov A, Ruchkina I, Knyazev O, Fadeeva N, Subbotin A, Chamkin S, Pyrkh A, Ivantsova M, Govorun V, isolates from Crohn's disease patients and healthy individuals. Data Brief, 23():103734(2019) [pubmed]

10.6019/PXD010920;

10.1016/j.dib.2019.103734;

Rakitina D, Baikova J, Pobeguts O, Bukato O, Butenko I, Garanina I, Levites M, Manolov A, Kanygina A, Kostryukova E, Semashko T, Karpova I, Babenko V, Scherbakov P, Khalif I, Shapina M, Parfenov A, Ruchkina I, Knyazev O, Fadeeva N, Subbotin A, Chamkin S, Pyrkh A, Ivantsova M, Govorun V, isolates from Crohn's disease patients and healthy individuals. Data Brief, 23():103734(2019) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: Crohn's disease, HPLC-MS/MS, proteome,E. coli

curator keyword: Biological

submitter keyword: Crohn's disease, HPLC-MS/MS, proteome,E. coli

Contact List

Gleb Yurievich Fisunov
contact affiliation	Department of Molecular Biology and Genetics, Lab of Proteome Research, Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow, 119992, Russia
contact email	herr.romanoff@gmail.com
lab head
Daria Rakitina
contact affiliation	Federal Research and Clinical Centre of Physical-Chemical Medicine Federal Medical Biological Agency, Moscow
contact email	drakitina@list.ru
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD010920
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/08/PXD010920

PRIDE project URI

Repository Record List

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