PXD010884

PXD010884 is an original dataset announced via ProteomeXchange.

Title	Cross-linking/mass spectrometry for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13)
Description	High-density cross-linking/mass spectrometry data was provided for four targets (T0957, T0968, T0975 and T0987) in the CASP13 experiment (https://www.predictioncenter.org/casp13/index.cgi).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:12:53.191.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Adam Belsom
SpeciesList	scientific name: Klebsiella pneumoniae 342; NCBI TaxID: 507522; scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Enterococcus faecalis (Streptococcus faecalis); NCBI TaxID: 1351; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2018-08-28 02:03:28	ID requested
1	2019-10-07 01:55:41	announced
⏵ 2	2024-10-22 04:12:54	announced	2024-10-22: Updated project metadata.

Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczy, ń, ska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pag, è, s G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A, Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins, 87(12):1283-1297(2019) [pubmed]

10.1002/prot.25816;

curator keyword: Technical

submitter keyword: Cross-linking/mass spectrometry

CASP

protein structure prediction

Juri Rappsilber
contact affiliation	Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
contact email	juri.rappsilber@tu-berlin.de
lab head
Adam Belsom
contact affiliation	Technische Universität Berlin
contact email	adam.belsom@tu-berlin.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD010884

PRIDE project URI

• PRIDE
  1. PXD010884
     1. Label: PRIDE project
     2. Name: Cross-linking/mass spectrometry for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13)