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PXD010884

PXD010884 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleCross-linking/mass spectrometry for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13)
DescriptionHigh-density cross-linking/mass spectrometry data was provided for four targets (T0957, T0968, T0975 and T0987) in the CASP13 experiment (https://www.predictioncenter.org/casp13/index.cgi).
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:12:53.191.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterAdam Belsom
SpeciesList scientific name: Klebsiella pneumoniae 342; NCBI TaxID: 507522; scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Enterococcus faecalis (Streptococcus faecalis); NCBI TaxID: 1351; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-08-28 02:03:28ID requested
12019-10-07 01:55:41announced
22024-10-22 04:12:54announced2024-10-22: Updated project metadata.
Publication List
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczy, ń, ska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pag, è, s G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A, Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins, 87(12):1283-1297(2019) [pubmed]
10.1002/prot.25816;
Keyword List
curator keyword: Technical
submitter keyword: Cross-linking/mass spectrometry
CASP
protein structure prediction
Contact List
Juri Rappsilber
contact affiliationWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
contact emailjuri.rappsilber@tu-berlin.de
lab head
Adam Belsom
contact affiliationTechnische Universität Berlin
contact emailadam.belsom@tu-berlin.de
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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