PXD010884 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Cross-linking/mass spectrometry for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13) |
Description | High-density cross-linking/mass spectrometry data was provided for four targets (T0957, T0968, T0975 and T0987) in the CASP13 experiment (https://www.predictioncenter.org/casp13/index.cgi). |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:12:53.191.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Adam Belsom |
SpeciesList | scientific name: Klebsiella pneumoniae 342; NCBI TaxID: 507522; scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Enterococcus faecalis (Streptococcus faecalis); NCBI TaxID: 1351; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-08-28 02:03:28 | ID requested | |
1 | 2019-10-07 01:55:41 | announced | |
⏵ 2 | 2024-10-22 04:12:54 | announced | 2024-10-22: Updated project metadata. |
Publication List
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczy, ń, ska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pag, è, s G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A, Assessment of chemical-crosslink-assisted protein structure modeling in CASP13. Proteins, 87(12):1283-1297(2019) [pubmed] |
10.1002/prot.25816; |
Keyword List
curator keyword: Technical |
submitter keyword: Cross-linking/mass spectrometry |
CASP |
protein structure prediction |
Contact List
Juri Rappsilber |
contact affiliation | Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. |
contact email | juri.rappsilber@tu-berlin.de |
lab head | |
Adam Belsom |
contact affiliation | Technische Universität Berlin |
contact email | adam.belsom@tu-berlin.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/10/PXD010884 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD010884
- Label: PRIDE project
- Name: Cross-linking/mass spectrometry for the 13th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP13)