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PXD010861

PXD010861 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleKidney proteomics in the unilateral ureter obstruction (UUO) mouse model
DescriptionTreatments for kidney fibrosis represent an urgent yet unmet clinical need. Effective therapies are limited due to not well understood molecular pathogenesis. We aimed at generating a comprehensive and integrated multi-omics data set (RNA/ microRNA transcriptomics and proteomics) of fibrotic kidneys which will be searchable through a user-friendly web application. Therefore, two commonly used mouse models were utilized: a reversible chemical-induced injury model (folic acid (FA) induced nephropathy) and an irreversible surgical-induced fibrosis model (unilateral ureteral obstruction (UUO)). RNA and small RNA sequencing as well as MS/MS with 10-plex tandem mass tags proteomics were performed with kidney samples from different time points over the course of fibrosis development. In summary, we present temporal and integrated multi-omics data from fibrotic mouse kidneys which are accessible through an interrogation tool to provide a searchable transcriptome and proteome for kidney fibrosis researcher.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:12:17.480.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMatthew Berberich
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02018-08-24 05:38:13ID requested
12019-05-09 00:21:51announced
22019-06-19 01:30:57announcedUpdated publication reference for PubMed record(s): 31201317.
32024-10-22 04:12:19announced2024-10-22: Updated project metadata.
Publication List
10.1038/s41597-019-0095-5;
Pavkovic M, Pantano L, Gerlach CV, Brutus S, Boswell SA, Everley RA, Shah JV, Sui SH, Vaidya VS, Multi omics analysis of fibrotic kidneys in two mouse models. Sci Data, 6(1):92(2019) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: CKD, fibrosis, mouse,Kidney
Contact List
Vishal S. Vaidya, Ph.D.
contact affiliationLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA Department of Medicine – Renal Division, Brigham and Women’s Hospital, Boston, MA
contact emailvvaidya@bwh.harvard.edu
lab head
Matthew Berberich
contact affiliationCenter for Protein Degradation/Dana-Farber Cancer Institute
contact emailmatthew_berberich@dfci.harvard.edu
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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