PXD010847

PXD010847 is an original dataset announced via ProteomeXchange.

Title	Proteome evolution under essential resource limitation
Description	Resource limitation is a major driver of ecological and evolutionary dynamics of organisms. Short-term responses to resource limitation include plastic changes in molecular phenotypes including protein expression. Yet little is known about the evolution of the molecular phenotype under longer-term resource limitation. Here, we combine experimental evolution of the green alga Chlamydomonas reinhardtii under multiple different non-substitutable resource limitation regimes with proteomic measurements to investigate evolutionary adaptation of the molecular phenotype. We demonstrate convergent proteomic evolution of core metabolic functions, including the Calvin-Benson cycle and gluconeogenesis, across different resource limitation selection environments. We did not observe proteomic changes consistent with optimized uptake of the different particular limiting resources.
HostingRepository	PRIDE
AnnounceDate	2018-12-04
AnnouncementXML	Submission_2018-12-04_03:59:17.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Alexander Betz
SpeciesList	scientific name: Chlamydomonas reinhardtii; NCBI TaxID: 3055;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap XL

Revision	Datetime	Status	ChangeLog Entry
0	2018-08-23 06:52:21	ID requested
1	2018-11-08 02:27:07	announced
2	2018-11-11 23:37:41	announced	Updated publication reference for PubMed record(s): 30405128.
⏵ 3	2018-12-04 03:59:18	announced	Updated project metadata.

Tamminen M, Betz A, Pereira AL, Thali M, Matthews B, Suter MJ, Narwani A, Proteome evolution under non-substitutable resource limitation. Nat Commun, 9(1):4650(2018) [pubmed]

curator keyword: Biological

submitter keyword: Chlamydomonas reinhardtii, divergent evolution, molecular phenotype, resource limitation, selection, stress, convergent evolution, shotgun proteomics, MudPIT

Anita Julianne Tricia Narwani
contact affiliation	Department of Aquatic Ecology, Eawag, Überlandstrasse 133, 8600 Dübendorf, Switzerland
contact email	anita.narwani@eawag.ch
lab head
Alexander Betz
contact affiliation	EAWAG
contact email	alexander.betz@eawag.ch
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/11/PXD010847

PRIDE project URI

• PRIDE
  1. PXD010847
     1. Label: PRIDE project
     2. Name: Proteome evolution under essential resource limitation