PXD010613

PXD010613 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	DeNovo Peptide Identification Deep Learning Test Set
Description	A set of bottom-up proteomics data for testing the deep learning network trained with data in PXD010000
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:39:50.006.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD010613
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Halanaerobium congolense; NCBI TaxID: 54121; scientific name: Akkermansia muciniphila ATCC BAA-835; NCBI TaxID: 349741; scientific name: Enterococcus faecalis (Streptococcus faecalis); NCBI TaxID: 1351; scientific name: Caulobacter crescentus (strain NA1000 / CB15N); NCBI TaxID: 565050;
ModificationList	Oxidation
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-07-30 03:26:42	ID requested
1	2022-09-24 19:44:39	announced
⏵ 2	2024-10-22 05:39:51	announced	2024-10-22: Updated project metadata.

Publication List

10.1021/acs.jproteome.2c00334;
10.6019/PXD010613;
Lee JY, Mitchell HD, Burnet MC, Wu R, Jenson SC, Merkley ED, Nakayasu ES, Nicora CD, Jansson JK, Burnum-Johnson KE, Payne SH, Metaproteomics. J Proteome Res, 21(8):2023-2035(2022) [pubmed]

10.1021/acs.jproteome.2c00334;

10.6019/PXD010613;

Lee JY, Mitchell HD, Burnet MC, Wu R, Jenson SC, Merkley ED, Nakayasu ES, Nicora CD, Jansson JK, Burnum-Johnson KE, Payne SH, Metaproteomics. J Proteome Res, 21(8):2023-2035(2022) [pubmed]

Keyword List

curator keyword: Technical
submitter keyword: bacterial diversity,machine learning, deep learning

curator keyword: Technical

submitter keyword: bacterial diversity,machine learning, deep learning

Contact List

Samuel Payne
contact affiliation	Pacific Northwest National Laboratory
contact email	samuel.payne@pnnl.gov
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD010613
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD010613

PRIDE project URI

Repository Record List

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