PXD010613 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | DeNovo Peptide Identification Deep Learning Test Set |
Description | A set of bottom-up proteomics data for testing the deep learning network trained with data in PXD010000 |
HostingRepository | PRIDE |
AnnounceDate | 2022-09-25 |
AnnouncementXML | Submission_2022-09-24_19:44:39.012.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD010613 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Matthew Monroe |
SpeciesList | scientific name: Halanaerobium congolense; NCBI TaxID: 54121; scientific name: Akkermansia muciniphila ATCC BAA-835; NCBI TaxID: 349741; scientific name: Enterococcus faecalis (Streptococcus faecalis); NCBI TaxID: 1351; scientific name: Caulobacter crescentus (strain NA1000 / CB15N); NCBI TaxID: 565050; |
ModificationList | Oxidation |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-07-30 03:26:42 | ID requested | |
⏵ 1 | 2022-09-24 19:44:39 | announced | |
Publication List
Lee JY, Mitchell HD, Burnet MC, Wu R, Jenson SC, Merkley ED, Nakayasu ES, Nicora CD, Jansson JK, Burnum-Johnson KE, Payne SH, Metaproteomics. J Proteome Res, 21(8):2023-2035(2022) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: machine learning, deep learning, bacterial diversity |
Contact List
Samuel Payne |
contact affiliation | Pacific Northwest National Laboratory |
contact email | samuel.payne@pnnl.gov |
lab head | |
Matthew Monroe |
contact affiliation | Pacific Northwest National Laboratory |
contact email | matthew.monroe@pnnl.gov |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD010613 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD010613
- Label: PRIDE project
- Name: DeNovo Peptide Identification Deep Learning Test Set