PXD010459

PXD010459 is an original dataset announced via ProteomeXchange.

Title	LCM-quantitative proteomics analysis of Al-sensitive tomato root cells
Description	Aluminum toxicity in acid soil is a major stress to plant growth. The primary target is in root-tips where the epidermal and outer cortex layers of cells in the root transition zone area are more sensitive to the toxic ions. This project used laser capture microdissection (LCM) technology to isolate these Al-sensitive cells. Tandem mass tag (TMT) proteomics was used to identify Al- induced proteomes. The information was used to determine functions of protein changes in response to Al toxicity in these Al-sensitive root cells.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:46:32.318.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ted Thannhauser
SpeciesList	scientific name: Bemisia sp. Unknown_Th_13_12_S.lycopersicum; NCBI TaxID: 1775787;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2018-07-17 05:48:30	ID requested
1	2019-11-07 00:46:11	announced
⏵ 2	2024-10-22 04:46:33	announced	2024-10-22: Updated project metadata.

10.1016/j.jprot.2019.103560;

Yang S, Li H, Bhatti S, Zhou S, Yang Y, Fish T, Thannhauser TW, The Al-induced proteomes of epidermal and outer cortical cells in root apex of cherry tomato 'LA 2710'. J Proteomics, 211():103560(2020) [pubmed]

curator keyword: Biological

submitter keyword: TMT proteomics, Laser Capture Microdissection,Root Al-sensitive cell proteomics

Theodore W. Thannhauser
contact affiliation	USDA-ARS
contact email	tt34@cornell.edu
lab head
Ted Thannhauser
contact affiliation	USDA-ARS
contact email	tt34@cornell.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD010459

PRIDE project URI

• PRIDE
  1. PXD010459
     1. Label: PRIDE project
     2. Name: LCM-quantitative proteomics analysis of Al-sensitive tomato root cells