PXD010459 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | LCM-quantitative proteomics analysis of Al-sensitive tomato root cells |
Description | Aluminum toxicity in acid soil is a major stress to plant growth. The primary target is in root-tips where the epidermal and outer cortex layers of cells in the root transition zone area are more sensitive to the toxic ions. This project used laser capture microdissection (LCM) technology to isolate these Al-sensitive cells. Tandem mass tag (TMT) proteomics was used to identify Al- induced proteomes. The information was used to determine functions of protein changes in response to Al toxicity in these Al-sensitive root cells. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:46:32.318.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Ted Thannhauser |
SpeciesList | scientific name: Bemisia sp. Unknown_Th_13_12_S.lycopersicum; NCBI TaxID: 1775787; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-07-17 05:48:30 | ID requested | |
1 | 2019-11-07 00:46:11 | announced | |
⏵ 2 | 2024-10-22 04:46:33 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1016/j.jprot.2019.103560; |
Yang S, Li H, Bhatti S, Zhou S, Yang Y, Fish T, Thannhauser TW, The Al-induced proteomes of epidermal and outer cortical cells in root apex of cherry tomato 'LA 2710'. J Proteomics, 211():103560(2020) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: TMT proteomics, Laser Capture Microdissection,Root Al-sensitive cell proteomics |
Contact List
Theodore W. Thannhauser |
contact affiliation | USDA-ARS |
contact email | tt34@cornell.edu |
lab head | |
Ted Thannhauser |
contact affiliation | USDA-ARS |
contact email | tt34@cornell.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/11/PXD010459 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD010459
- Label: PRIDE project
- Name: LCM-quantitative proteomics analysis of Al-sensitive tomato root cells