PXD010431

PXD010431 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	An Aspergillus niger colony locally adapts its molecular responses to spatially separated substrates
Description	A. niger colony sections grown on spatially separated substrates (glucose, wheat bran, sugar beet pulp) using transcriptomics, proteomics and metabolomics showed high diversity and plasticity within the colony.
HostingRepository	PRIDE
AnnounceDate	2020-05-26
AnnouncementXML	Submission_2020-05-26_12:12:01.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD010431
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Aspergillus niger; NCBI TaxID: 5061;
ModificationList	Oxidation
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-07-13 07:39:17	ID requested
⏵ 1	2020-05-26 12:12:02	announced

Publication List

Daly P, Peng M, Mitchell HD, Kim YM, Ansong C, Brewer H, de Gijsel P, Lipton MS, Markillie LM, Nicora CD, Orr G, Wiebenga A, Hild, é, n KS, Kabel MA, Baker SE, M, ä, kel, ä MR, de Vries RP, Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. Environ Microbiol, 22(3):1154-1166(2020) [pubmed]

Daly P, Peng M, Mitchell HD, Kim YM, Ansong C, Brewer H, de Gijsel P, Lipton MS, Markillie LM, Nicora CD, Orr G, Wiebenga A, Hild, é, n KS, Kabel MA, Baker SE, M, ä, kel, ä MR, de Vries RP, Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. Environ Microbiol, 22(3):1154-1166(2020) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: CAZymes, lignocellulose, carbon source composition

curator keyword: Biological

submitter keyword: CAZymes, lignocellulose, carbon source composition

Contact List

Ronald de Vries
contact affiliation	Westerdijk Fungal Biodiversity Institute
contact email	r.devries@westerdijkinstitute.nl
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD010431
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD010431

PRIDE project URI

Repository Record List

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