PXD010301

PXD010301 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Immunopeptidome analysis of HLA DR1 bound peptides
Description	Elucidating the role of HLA-DO in mediating qualitative and quantitative changes in the MHC-II peptidome. Five biological replicates of LG2-WT(012916_WT1,022216_WT1, 02080316MHCIIWT1, 080316MHCIIWT2, 080316MHCIIWT3) and DO knockout LG-2 cells (012916_KO1, 022216_DO1, 081216MHCIIKO1, 080416MHCIIKO2, 080416MHCIIKO3) were processed in parallel. Each biological replicate has 3 technical replicates. In manuscript, these biological replicates are labeled as WTa, WTb, WTc,WTd, WTe,DOa, DOb,DOc, DOd, DOe respectively
HostingRepository	MassIVE
AnnounceDate	2019-01-08
AnnouncementXML	Submission_2019-01-08_15:25:55.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Padma Pandurang Nanaware
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	unknown modification: PRIDE:0000398
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2018-07-03 18:28:40	ID requested
⏵ 1	2019-01-08 15:25:56	announced

Publication List

Nanaware PP, Jurewicz MM, Leszyk JD, Shaffer SA, Stern LJ, HLA-DO Modulates the Diversity of the MHC-II Self-peptidome. Mol Cell Proteomics, 18(3):490-503(2019) [pubmed]

Nanaware PP, Jurewicz MM, Leszyk JD, Shaffer SA, Stern LJ, HLA-DO Modulates the Diversity of the MHC-II Self-peptidome. Mol Cell Proteomics, 18(3):490-503(2019) [pubmed]

Keyword List

submitter keyword: Human, LG2 cells, peptide repertoire, LC-MS/MS

submitter keyword: Human, LG2 cells, peptide repertoire, LC-MS/MS

Contact List

Lawrence J. Stern
contact affiliation	UMASS Medical School
contact email	Lawrence.Stern@umassmed.edu
lab head
Padma Pandurang Nanaware
contact affiliation	University of Massachusetts Medical School
contact email	Padma.Nanaware@umassmed.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000082570

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000082570