PXD010153 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Quantification and discovery of sequence determinants of protein per mRNA amount in 29 human tissues |
Description | We analyzed the contribution of known sequence determinants of protein synthesis and degradation and novel mRNA and protein sequence motifs that we found by association testing. In order to investigate the functional understanding of novel mRNA motifs, an RNA competitive-binding assay was developed to systematically identify motif-specific RNA binding proteins and to measure interaction strength thereof. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:50:34.419.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Dongxue Wang |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | L-methionine sulfoxide; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2018-06-18 06:12:24 | ID requested | |
1 | 2018-07-02 01:32:17 | announced | |
2 | 2019-02-22 00:34:52 | announced | Updated project metadata. |
⏵ 3 | 2024-10-22 04:50:42 | announced | 2024-10-22: Updated project metadata. |
Publication List
Eraslan B, Wang D, Gusic M, Prokisch H, Hallstr, ö, m BM, Uhl, é, n M, Asplund A, Pont, é, n F, Wieland T, Hopf T, Hahne H, Kuster B, Gagneur J, human tissues. Mol Syst Biol, 15(2):e8513(2019) [pubmed] |
10.15252/msb.20188513; |
Keyword List
curator keyword: Biological |
submitter keyword: RNA pulldown |
Contact List
Bernhard Küster |
contact affiliation | Chair of Proteomics and Bioanalytics, Technische Universität München, Germany |
contact email | kuster@tum.de |
lab head | |
Dongxue Wang |
contact affiliation | Chair of Proteomics and Bioanalytics, Technical University of Munich |
contact email | dx.wang@tum.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/02/PXD010153 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD010153
- Label: PRIDE project
- Name: Quantification and discovery of sequence determinants of protein per mRNA amount in 29 human tissues